G422439


Basic Information

Item Value
gene id G422439
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6986869 ~ 7028505 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU485185
TAACAATTCATTTGCCTAAAAGATTTAAGCATTTTTTGCAAAAAAACACCCTTGTTGCATTGCAATTAATACATTATATTATACACTTTGTGCAAAATCAGTCATAATCAACATTTTTTCTTCAGACTTCAGATCTCACACAGCCATTGTACATTTATTTGTTGACGCAAGGTTAACAATTCACAAGTCTGTCAATGTTAGAAAAATGTTGGTTGATAGAAACCCCTGGCCACTTACCCATATTCCCACAGCCAGAACCACCAGAAAATATATAGCAATCACAGAGATGTCCGCTGGATTGTTAATATGAACGGTGACATTTCTTCTATTCTCATTGCGGAGAAAAGAGAATCCAAAATAATCTGCCCCCATTTTGATGGTGTTTGAAGCAGGGCAAGTGTAGCACCACACTGTGTGTGACACGATGGTAAAGACACCTGGCTCAGACGTTCACTTGCAGGTGTGTG
>TU485191
CTAAAACATAAATTCCTGACACACATCATAACTATTAAATATCATGAATGTAATTATTAGGCTTTTTTTTAAACATACATTCAACTCAAAGCCTCCGATGGCGACACCAGCAGCTGCTCCACTTCCTGCTAGTCCCACAAAATGTCCACTTCCAATGTTACTTGCAAAGAGAGAGGCTCCAATCGGCCACCACACCATACTTCGGCCAGCCAGGAAAAAGCCTCCTACTGTGGCTCGATTGGTTCGTACCATTGCCCATATTCCCACAGCCAGAACCACCAGAAAATATATAGCAATCACAGAGATGTCCGCTGGATTGTTAATATGAACGGTGACATTTCTTCTATTCTCATTGCGGAGAAAAGAGAATCCAAAATAATCTGCCCCCATTTTGATGGTGTTTGAAGCAGGGCAAGTGTAGCACCACACTGTGTGTGACACGATGGTAAAGACACCTGGCTCAGACGTTCACTTGCAGGTGTGTGTGTGTGTGCGCACGCTTTTACTTTTATGTGTCCGTTTACGGATGGGTGTGACCTCAAAGTTAATTATAAAAGTGTTTTTGTGATTTACAGACAAAAATCTGAGATTGAGAGTCATTAATGATCAACTTACCAGTATATAGCAGAAAGTGTGAGACTGGGTTCCTGTAAAGCGTAAAAGCACATTTCATCAACCACATCACCTGCAACTTAATTAATGGGTTTCATTGATTCAGCTAAAGATCAACTACTGCAATTTATGGTCCAGACATTAGTGTACCTACTGTAACACTAAAAGTTATAAGGACACCCTGAGCAGTTGTGGCCTAATGGTTAGAGAGTGGGACTTGTAACCTGAACTTGTGTGTGTTAAAAACTCACTGCTGTGTGTGTGCACTTGGATGAGTGAAATGCAGAGCACAAATTCTGAGTATGGGACACCACTACATGTGACGGTGAAAAGTGGCATTGCAGCTTGAAGACAAAAGAGAGTGAAAATGGTGATGAAACTTCAAACTAAATTTTGCATACTGGGCTCCAGCACTACAGATGGATATGAATGGATATGAATCACCCTTCCATCCTGAAACAATACAATTGGCAATATCTGTTCTGTTCTACTAAAAAAGTTTTAATGGGAGCTCTGCACAGTGCCTGATTAAAAATGACTGAAAACTGCTTTAGTCTCTTAGCATAGCTTTAACAAGCTAAGAAAGATGCACTGTCCGAAATCACAGGTACTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU485185 False 467 lncRNA 0.38 2 6986869 7024587
TU485191 True 1226 lncRNA 0.41 3 7023380 7028505

Neighbor

gene id symbol gene type direction distance location
CI01000304_06935639_06967113 DEPDC5 coding downstream 17815 6935528 ~ 6969054 (-)
CI01000304_06931421_06933921 YWHAG.S, 143G2, 143G1, YWHAH, YWHAG.L, YWHAG2, YWHAG, YWHAG1 coding downstream 52810 6930738 ~ 6934059 (-)
CI01000304_06914589_06924928 SLC5A1, SGLT1 coding downstream 61717 6913830 ~ 6925152 (-)
CI01000304_06881372_06883185 RNF208 coding downstream 103684 6881054 ~ 6883185 (-)
CI01000304_06867535_06870134 NA coding downstream 116735 6867117 ~ 6870134 (-)
CI01000304_07051182_07056250 NA coding upstream 22623 7051128 ~ 7056250 (-)
CI01000304_07065444_07081535 GNAZ coding upstream 36714 7065219 ~ 7081970 (-)
CI01000304_07183432_07198305 NT5C2L1 coding upstream 154117 7182622 ~ 7198305 (-)
CI01000304_07203008_07211715 NA coding upstream 174459 7202964 ~ 7211715 (-)
CI01000304_07212382_07216898 SKA1 coding upstream 183325 7211830 ~ 7216898 (-)
G422437 NA non-coding downstream 2926 6983695 ~ 6983943 (-)
G422436 NA non-coding downstream 3241 6982088 ~ 6983628 (-)
G422429 NA non-coding downstream 14638 6972031 ~ 6972231 (-)
G422420 NA non-coding downstream 15999 6907385 ~ 6970870 (-)
G422373 NA non-coding downstream 299702 6686928 ~ 6687167 (-)
G422466 NA non-coding upstream 83650 7112155 ~ 7112374 (-)
G422468 NA non-coding upstream 91226 7119731 ~ 7120017 (-)
G422469 NA non-coding upstream 93746 7122251 ~ 7122511 (-)
G422473 NA non-coding upstream 98907 7127412 ~ 7128023 (-)
G422512 NA non-coding upstream 248494 7276999 ~ 7277246 (-)
G422378 NA other downstream 203823 6744679 ~ 6783046 (-)
G422354 NA other downstream 355370 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 503374 6480743 ~ 6483986 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 2313922 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 2721668 4263846 ~ 4265201 (-)
G422810 NA other upstream 601654 7630159 ~ 7652703 (-)
G423386 NA other upstream 1833718 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 2539851 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 2708241 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 3124941 10160458 ~ 10163762 (-)

Expression


Co-expression Network