Gene
RNA
| Item | Value |
|---|---|
| gene id | G421305 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 7182644 ~ 7186187 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU483874 | True | 3311 | lncRNA | 0.33 | 2 | 7182644 | 7186187 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_07154005_07160649 | SPPL3 | coding | upstream | 21519 | 7154005 ~ 7161125 (+) |
| CI01000304_07024195_07048285 | SLC5A1, SGLT1 | coding | upstream | 134359 | 7024195 ~ 7048285 (+) |
| CI01000304_06986969_07013827 | NA | coding | upstream | 166810 | 6986828 ~ 7015834 (+) |
| CI01000304_06875225_06878962 | NA | coding | upstream | 303336 | 6873700 ~ 6879308 (+) |
| CI01000304_06864719_06866382 | NA | coding | upstream | 316199 | 6864719 ~ 6866445 (+) |
| CI01000304_07236677_07272874 | KCNN2 | coding | downstream | 49958 | 7236145 ~ 7272960 (+) |
| CI01000304_07288867_07299197 | DRG1, DRG1.L | coding | downstream | 102680 | 7288867 ~ 7299754 (+) |
| CI01000304_07314354_07323703 | SLC20A1.L, SLC20A1.S, SLC20A1B, SLC20A1 | coding | downstream | 127510 | 7313697 ~ 7324618 (+) |
| CI01000304_07334198_07342123 | PIGO | coding | downstream | 147875 | 7334062 ~ 7342298 (+) |
| CI01000304_07352697_07354032 | NA | coding | downstream | 166434 | 7352621 ~ 7354396 (+) |
| G421311 | NA | non-coding | upstream | 5388 | 7175481 ~ 7177256 (+) |
| G421365 | NA | non-coding | upstream | 53912 | 7128493 ~ 7128732 (+) |
| G421362 | NA | non-coding | upstream | 55772 | 7126593 ~ 7126872 (+) |
| G421358 | NA | non-coding | upstream | 62603 | 7119810 ~ 7120041 (+) |
| G421310 | NA | non-coding | upstream | 85136 | 7080425 ~ 7097508 (+) |
| G421369 | NA | non-coding | downstream | 16773 | 7202960 ~ 7203215 (+) |
| G421383 | NA | non-coding | downstream | 90747 | 7276934 ~ 7277262 (+) |
| G421384 | NA | non-coding | downstream | 91443 | 7277630 ~ 7277888 (+) |
| G421387 | NA | non-coding | downstream | 94710 | 7280897 ~ 7283130 (+) |
| G421386 | NA | non-coding | downstream | 97019 | 7283206 ~ 7465770 (+) |
| G421162 | NA | other | upstream | 939647 | 6241233 ~ 6242997 (+) |
| CI01000304_05173869_05175309 | NRARP, NRARP.L, NRARPA, NRARPB | other | upstream | 2005853 | 5173426 ~ 5176791 (+) |
| G420445 | NA | other | upstream | 2878812 | 4303336 ~ 4303832 (+) |
| G418981 | NA | other | upstream | 5088966 | 2092494 ~ 2093678 (+) |
| G418116 | NA | other | upstream | 6307395 | 872670 ~ 875249 (+) |
| G421435 | NA | other | downstream | 297954 | 7484141 ~ 7484688 (+) |
| CI01000304_07979388_07979919 | TMEM230, TMEM230A | other | downstream | 792441 | 7979078 ~ 7980735 (+) |
| CI01000304_08232073_08235598 | NA | other | downstream | 1045807 | 8231293 ~ 8235655 (+) |
| CI01000304_08671901_08672203 | NA | other | downstream | 1485583 | 8671770 ~ 8672555 (+) |
