G421387


Basic Information

Item Value
gene id G421387
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7280897 ~ 7283130 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU483971
CGATTATCGATTTTTTTTTTTTTCTGGAAACTGATTATTTTCAGGATTCTTTGATGAGTAGAAAGCTTAAAAGAACAGCATTTATTTGAAATAGAAATCTTTTGTAACATTATTACATGTCTTTACTGTCACTTTTTAACAATTTCATGCATCCTTATAAAAGTATTAAAAAAGTACCATGGCAAAAATATAAAAACAAAATATATAAATAAAAAATACATATACTGGTTTATGTAATTTAATTTAAAATTTATGCTCACAATTTATACTTACACAATATAAATAGGTCTTTATTTGTCGATTTATGCTTATATATTTTAGGAAGGGGGTTAAGAAATCATCACATTTGAGAAAAAAAAAACCTGTTCTAAATTATTTAAAGCAGAAGATGATAGGCTGTAGAACCCGTTTGTGGCCATAGCTACTTGCTCTGTAAACATGAGGAACATCTAAGATCCAAGACTGACAATTGTTGAAGAAACATTTTCCATAAAATGCAAAATTGCATACAGCTGATTTCAAACTGAAATATTTGAAAGCAGATTTTCTCATGCTCTTATTTAAAATGTCTGGCATAACTTGCCTTTATTTACAACAAAACAAAAGCTTTGACTTCAGTAGGGGTGTGTACATTCTTGTTTCATAACATCATAATAGGGTGAAGCAGTAGTTTAGGTGGATCTTGCATATGGTTGTGCAACCAAGAGCTCTAAGTTCCCATCAAACAAGTTTCAGTCACTCCTTATGATTTCTGATGATCCAACAGCCTTCGCATTTTACACACAAAAGAATTAAATAGCTCTTTTTGTTTTGACAGTTCCTGCAGTTTTTTTTTTCCTGCAGTATAAGATAAATCATGCAACAAAAAAAAACCTCATGCAAAAGTTCATGGAAAGCAGTTTCTTTTTAATGAGAGACTTCAAAATAAATACATAATTATATATACATATATACAAAGGATTATTTTATGCTTCACCTTTACATATCAATTTACCTCTTCAGACACAGGAAAGGCAGGTGACAATAGGGAGAGAGTCCCGTGAAACTTCTATTGTATTATTAAGTGTAATGTGCAAATTAAAACCAATTCAAACTTATATAAAAGTATCATAGTAAACATTCACATTTCACTTCAGCAGCATGTGCAAACTAGCAAGCACTGAACAAGATAGTCCATTCAAGTAAGGGATATGTACAACACTGGGGTGCAAAAAGTCATTTTTGCACTTCGTTGAATCCGCAATTAAATCTAATAGAGATCAAGTAGAAATGTGGACGGCACATGTGTCTCAGTCCCATCTTAACTCAACGGAGCAACATTTGCCATTCTTCCCCAGGTCCTGAGTACCAGACGGTCCGGGTAATGTGGGCCTTTGCATGGCAAGTTTTTCATCTTCTGTAGATCATGACTTTTGACCCCGGGCCATGCAGAAAGACGCTGAGGACTTCGTATAATGAAGTTCCGCCTGCTTGGTGTCACTAGCCAAGGTTCTGGTGCCACGTTTTCCACAAAGTTCCGCCTGCTTGGTGTCACTAGCCAAGGTTCTGGTGCCACGTTTTCCACAAAGTTCTGCCTGCTTGGTGTCACTAGCTGAGGTTCCGGTGCCACGTTTTCCACATAAATCTGGTAGTTTTTACCTTTGTTATTGTCTACAAGTTTCAAATGGCTATTGCCGGGTCGGAACACCATTAAGAATTCTACGTGCTCCTTTGGGTCCAGCTCAGATGGTAGAGACACATTAAAAGCAAACAAGTCGGTCTCCAAAGTTGCATGTGGTTCCCTCACATAAGTGCATGCAATTTCTTTGTGGCTTCGCCATGAGTCAAAAGTTATGTGGACAACGACAGTCTTGTCGAACTTAATGTTGCAGACCCGTACAGTTCCGCTCAACACCCTTTCGGTCAAGCTACAGCTCTCCAACTGCACTAAGGTTTCCTTCAAGCTTGCACGGTCTGCAATAGGCTGTGGAAAACCAAGCTTCAGTCGCAGTCTCGCACTCTGCATGGGTGCTCTAGC
>TU483972
CGATTATCGATTTTTTTTTTTTTCTGGAAACTGATTATTTTCAGGATTCTTTGATGAGTAGAAAGCTTAAAAGAACAGCATTTATTTGAAATAGAAATCTTTTGTAACATTATTACATGTCTTTACTGTCACTTTTTAACAATTTCATGCATCCTTATAAAAGTATTAAAAAAGTACCATGGCAAAAATATAAAAACAAAATATATAAATAAAAAATACATATACTGGTTTATGTAATTTAATTTAAAATTTATGCTCACAATTTATACTTACACAATATAAATAGGTCTTTATTTGTCGATTTATGCTTATATATTTTAGGAAGGGGGTTAAGAAATCATCACATTTGAGAAAAAAAAAACCTGTTCTAAATTATTTAAAGCAGAAGATGATAGGCTGTAGAACCCGTTTGTGGCCATAGCTACTTGCTCTGTAAACATGAGGAACATCTAAGATCCAAGACTGACAATTGTTGAAGAAACATTTTCCATAAAATGCAAAATTGCATACAGCTGATTTCAAACTGAAATATTTGAAAGCAGATTTTCTCATGCTCTTATTTAAAATGTCTGGCATAACTTGCCTTTATTTACAACAAAACAAAAGCTTTGACTTCAGTAGGGGTGTGTACATTCTTGTTTCATAACATCATAATAGGGTGAAGCAGTAGTTTAGGTGGATCTTGCATATGGTTGTGCAACCAAGAGCTCTAAGTTCCCATCAAACAAGTTTCAGTCACTCCTTATGATTTCTGATGATCCAACAGCCTTCGCATTTTACACACAAAAGAATTAAATAGCTCTTTTTGTTTTGACAGTTCCTGCAGTTTTTTTTTTCCTGCAGTATAAGATAAATCATGCAACAAAAAAAAACCTCATGCAAAAGTTCATGGAAAGCAGTTTCTTTTTAATGAGAGACTTCAAAATAAATACATAATTATATATACATATATACAAAGGATTATTTTATGCTTCACCTTTACATATCAATTTACCTCTTCAGACACAGGAAAGGCAGGTGACAATAGGGAGAGAGTCCCGTGAAACTTCTATTGTATTATTAAGTGTAATGTGCAAATTAAAACCAATTCAAACTTATATAAAAGTATCATAGTAAACATTCACATTTCACTTCAGCAGCATGTGCAAACTAGCAAGCACTGAACAAGATAGTCCATTCAAGTAAGGGATATGTACAACACTGGGGTGCAAAAAGTCATTTTTGCACTTCGTTGAATCCGCAATTAAATCTAATAGAGATCAAGTAGAAATGTGGACGGCACATGTGTCTCAGTCCCATCTTAACTCAACGGAGCAACATTTGCCATTCTTCCCCAGGTCCTGAGTACCAGACGGTCCGGGTAATGTGGGCCTTTGCATGGCAAGTTTTTCATCTTCTGTAGATCATGACTTTTGACCCCGGGCCATGCAGAAAGACGCTGAGGACTTCGTATAATGAAGTTCCGCCTGCTTGGTGTCACTAGCCAAGGTTCTGGTGCCACGTTTTCCACAAAGTTCCGCCTGCTTGGTGTCACTAGCCAAGGTTCTGGTGCCACGTTTTCCACAAAGTTCCGCCTGCTTGGTGTCACTAGCCAAGGTTCTGGTGCCACGTTTTCCACAAAGTTCTGCCTGCTTGGTGTCACTAGCTGAGGTTCCGGTGCCACGTTTTCCACATAAATCTGGTAGTTTTTACCTTTGTTATTGTCTACAAGTTTCAAATGGCTATTGCCGGGTCGGAACACCATTAAGAATTCTACGTGCTCCTTTGGGTCCAGCTCAGATGGTAGAGACACATTAAAAGCAAACAAGTCGGTCTCCAAAGTTGCATGTGGTTCCCTCACATAAGTGCATGCAATTTCTTTGTGGCTTCGCCATGAGTCAAAAGTTATGTGGACAACGACAGTCTTGTCGAACTTAATGTTGCAGACCCGTACAGTTCCGCTCAACACCCTTTCGGTCAAGCTACAGCTCTCCAACTGCACTAAGGTTTCCTTCAAGCTTGCACGGTCTGCAATAGGCTGTGGAAAACCAAGCTTCAGTCGCAGTCTCGCACTCTGCATGGGTGCTCTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU483971 False 2017 lncRNA 0.37 3 7280897 7283130
TU483972 True 2071 lncRNA 0.38 3 7280897 7283130

Neighbor

gene id symbol gene type direction distance location
CI01000304_07236677_07272874 KCNN2 coding upstream 7937 7236145 ~ 7272960 (+)
CI01000304_07154005_07160649 SPPL3 coding upstream 119772 7154005 ~ 7161125 (+)
CI01000304_07024195_07048285 SLC5A1, SGLT1 coding upstream 232612 7024195 ~ 7048285 (+)
CI01000304_06986969_07013827 NA coding upstream 265063 6986828 ~ 7015834 (+)
CI01000304_06875225_06878962 NA coding upstream 401589 6873700 ~ 6879308 (+)
CI01000304_07288867_07299197 DRG1, DRG1.L coding downstream 5737 7288867 ~ 7299754 (+)
CI01000304_07314354_07323703 SLC20A1.L, SLC20A1.S, SLC20A1B, SLC20A1 coding downstream 30567 7313697 ~ 7324618 (+)
CI01000304_07334198_07342123 PIGO coding downstream 50932 7334062 ~ 7342298 (+)
CI01000304_07352697_07354032 NA coding downstream 69491 7352621 ~ 7354396 (+)
CI01000304_07409324_07425656 PHF24 coding downstream 124590 7407720 ~ 7426027 (+)
G421384 NA non-coding upstream 3009 7277630 ~ 7277888 (+)
G421383 NA non-coding upstream 3635 7276934 ~ 7277262 (+)
G421369 NA non-coding upstream 77682 7202960 ~ 7203215 (+)
G421305 NA non-coding upstream 94710 7182644 ~ 7186187 (+)
G421311 NA non-coding upstream 103641 7175481 ~ 7177256 (+)
G421386 NA non-coding downstream 76 7283206 ~ 7465770 (+)
G421399 NA non-coding downstream 84533 7367663 ~ 7368814 (+)
G421434 NA non-coding downstream 200345 7483475 ~ 7483688 (+)
G421436 NA non-coding downstream 201623 7484753 ~ 7484961 (+)
G421440 NA non-coding downstream 207958 7491088 ~ 7491301 (+)
G421162 NA other upstream 1037900 6241233 ~ 6242997 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other upstream 2104106 5173426 ~ 5176791 (+)
G420445 NA other upstream 2977065 4303336 ~ 4303832 (+)
G418981 NA other upstream 5187219 2092494 ~ 2093678 (+)
G418116 NA other upstream 6405648 872670 ~ 875249 (+)
G421435 NA other downstream 201011 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 695498 7979078 ~ 7980735 (+)
CI01000304_08232073_08235598 NA other downstream 948864 8231293 ~ 8235655 (+)
CI01000304_08671901_08672203 NA other downstream 1388640 8671770 ~ 8672555 (+)

Expression


Co-expression Network