G422521


Basic Information

Item Value
gene id G422521
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7338888 ~ 7340699 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU485293
GAGAAGGTGTTGAGGGTCACCAATGAGGCAGGAAGTACAGTGCCTGTGTGACCTTGAGGAAAACCCACAAATGCAGCACCCCATTGAATGGAGGGAAAGGTTGGGAGGTGTCCCGTAGCATGGAAAAACTGGGCAGCCGCCAGAGACCATGAAACCACTGGAGCCCATGGCACACTGAAACCATTGGAGTGTTTGTGCAGGCTGGAGAGAGTGGTGCTACATGCGTGGATGTGCAGCATAGCTGCGGCCTCCAGCAGGAGAAGCAGGAAGGCAAGGGCCATTCCCTCTGGATGGAGTAGCAGAAGCGCCAACCCCAGGAGTCCGCACAGCAGGATCAAGGGCGCCGAGTACACTGTACCGAGCCCGTAAGCCTCCACGGCTGGCCTGCTGTCTGCTTCGCCACCTTCCGTGACCCCGTCCTCCAGCGAGTGTCGGATACGCTGATACAGCTGTGGTATAAGGTGGTGCAGTTCAGCCTGTGGACTGATTCCCGTGCTGGCTCGGTACTTGGGGGGTGGCAGGGATGTTCCTCGAGAGTTCAACGGAGTCCTTGACTTGAGGAACACAGTCATGGGATCCACCCACAACAGGAGCAATCCCAGGCTCAGTAGGAAGAAAGTGGTCCGCGGCAGGAACACCTGGGCTAGGCCGATTAGCTCAGACAAATTCCGGAAGGTGTCCTCTGGGGTGGCGCTCACTGCCCAATGCAACCCCATGCAAACACAGGCCAGTGGTAAAAGGAAGCAGGCCGAAAACACAGTCGCACTGGAACAGTTAAGGTTCCCGTAGTGTCTGAGCCAACGATGTAAAAGATACCCCCACATGGCCAATGAGACCACAGAGAGGACATAGTGGAGGTTACGCAGTTGGCTGTCCTGTACACGTGAAAGCGGGGAGAGGAAAGGTGAGGGCTGGCAGGTGCCCTGCTCCTCTCGGCAATTGTGGAGTGAGAGGGATAGGTAAAGTGATCCAACCATTACTCCCAACCACACCAGCAAGATGGTGGCCTCCCGTCTAACAACTGAGGACGGCAGCGCTGTTGGGAGCAGCCGAGGTGGCTTCTGGGTGTCTGGTGGAGGAAGCGGGACCAGGAATCCATTCCAGTTGAGACGGAGAGGAACATATACGCTCAACGTCAAGAGCAAGAAGGTAACCACGTGGCCCTCGTAGATGACGTAGCTGTCAGAGAGTAGCGAGGCACAGCGCAGGAAAAGCACCAGCAGGGCTGGCGTGAGGAGGCCAGAAGCTGACCACCTACCTCTTGGAGAAACTCCACGAGTCCTCCATAGAAACAAAACCTCAGAAGAAAGTGATGCAGCTCCCAAACACCACGAAAGCTCCAAATAACCTTGTGTGAACAGCTGACCTGCAGCTACTACTAGTCCTACGACCAGCCCTGAAAGTATGGGCAACTTCAGCAGGCCCTCCTGAATTACTACATGAGACAACTCGGAAATGACGTAGCACAGCACACAGGAAACCCCTAAGATTAAGAGCCCAGCAGCCATTTTGAAAGGGTTGAAACGGGCCCAGGAGGCTCTACAAGTCTCCCTGACAGCTGTCAGATAGTTCTGCATGGAGACGACTAACTCAAGAGAGGGAACATGACCCTTGTGGACAGCGGCCAAGTACTGGGAGGAAATGTTTGAGAAGTCAGCCCGCAGTTGAGACAGACTGTCTGGTGGGATGTCTTTGGCCATGTTAGAGTAGGTCTCCAAGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU485293 True 1721 lncRNA 0.55 2 7338888 7340699

Neighbor

gene id symbol gene type direction distance location
CI01000304_07325899_07328203 NA coding downstream 10685 7325648 ~ 7328203 (-)
CI01000304_07303509_07309222 STARD7 coding downstream 27177 7302824 ~ 7311711 (-)
CI01000304_07282197_07285838 NA coding downstream 53050 7281481 ~ 7285838 (-)
CI01000304_07218265_07232779 SMARCAD1B coding downstream 106109 7218220 ~ 7232779 (-)
CI01000304_07212382_07216898 SKA1 coding downstream 121990 7211830 ~ 7216898 (-)
CI01000304_07464639_07466430 NA coding upstream 123536 7464235 ~ 7466430 (-)
CI01000304_07612069_07709665 NA coding upstream 271370 7612069 ~ 7709665 (-)
CI01000304_07961608_07968820 NA coding upstream 620866 7961565 ~ 7968949 (-)
CI01000304_08165245_08217042 NA coding upstream 824498 8165197 ~ 8217042 (-)
CI01000304_08218405_08218927 NA coding upstream 876935 8217634 ~ 8218927 (-)
G422442 NA non-coding downstream 13329 7322023 ~ 7325559 (-)
G422512 NA non-coding downstream 61642 7276999 ~ 7277246 (-)
G422473 NA non-coding downstream 210865 7127412 ~ 7128023 (-)
G422469 NA non-coding downstream 216377 7122251 ~ 7122511 (-)
G422468 NA non-coding downstream 218871 7119731 ~ 7120017 (-)
G422528 NA non-coding upstream 11965 7352664 ~ 7354386 (-)
G422536 NA non-coding upstream 27189 7367888 ~ 7368822 (-)
G422564 NA non-coding upstream 70657 7411356 ~ 7440582 (-)
G422563 NA non-coding upstream 93657 7434356 ~ 7436800 (-)
G422808 NA non-coding upstream 262822 7603521 ~ 7607629 (-)
G422378 NA other downstream 555842 6744679 ~ 6783046 (-)
G422354 NA other downstream 707389 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 855393 6480743 ~ 6483986 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 2665941 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 3073687 4263846 ~ 4265201 (-)
G422810 NA other upstream 289460 7630159 ~ 7652703 (-)
G423386 NA other upstream 1521524 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 2227657 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 2396047 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 2812747 10160458 ~ 10163762 (-)

Expression


Co-expression Network