Gene
RNA
| Item | Value |
|---|---|
| gene id | G422536 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 7367888 ~ 7368822 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU485309 | False | 431 | lncRNA | 0.29 | 2 | 7367888 | 7368822 |
| TU485311 | True | 503 | lncRNA | 0.29 | 3 | 7367888 | 7368822 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_07325899_07328203 | NA | coding | downstream | 39685 | 7325648 ~ 7328203 (-) |
| CI01000304_07303509_07309222 | STARD7 | coding | downstream | 56177 | 7302824 ~ 7311711 (-) |
| CI01000304_07282197_07285838 | NA | coding | downstream | 82050 | 7281481 ~ 7285838 (-) |
| CI01000304_07218265_07232779 | SMARCAD1B | coding | downstream | 135109 | 7218220 ~ 7232779 (-) |
| CI01000304_07212382_07216898 | SKA1 | coding | downstream | 150990 | 7211830 ~ 7216898 (-) |
| CI01000304_07464639_07466430 | NA | coding | upstream | 95413 | 7464235 ~ 7466430 (-) |
| CI01000304_07612069_07709665 | NA | coding | upstream | 243247 | 7612069 ~ 7709665 (-) |
| CI01000304_07961608_07968820 | NA | coding | upstream | 592743 | 7961565 ~ 7968949 (-) |
| CI01000304_08165245_08217042 | NA | coding | upstream | 796375 | 8165197 ~ 8217042 (-) |
| CI01000304_08218405_08218927 | NA | coding | upstream | 848812 | 8217634 ~ 8218927 (-) |
| G422528 | NA | non-coding | downstream | 13502 | 7352664 ~ 7354386 (-) |
| G422521 | NA | non-coding | downstream | 27189 | 7338888 ~ 7340699 (-) |
| G422442 | NA | non-coding | downstream | 42329 | 7322023 ~ 7325559 (-) |
| G422512 | NA | non-coding | downstream | 90642 | 7276999 ~ 7277246 (-) |
| G422473 | NA | non-coding | downstream | 239865 | 7127412 ~ 7128023 (-) |
| G422564 | NA | non-coding | upstream | 42534 | 7411356 ~ 7440582 (-) |
| G422563 | NA | non-coding | upstream | 65534 | 7434356 ~ 7436800 (-) |
| G422808 | NA | non-coding | upstream | 234699 | 7603521 ~ 7607629 (-) |
| G422840 | NA | non-coding | upstream | 382449 | 7751271 ~ 7751647 (-) |
| G422895 | NA | non-coding | upstream | 464970 | 7833792 ~ 7834067 (-) |
| G422378 | NA | other | downstream | 584842 | 6744679 ~ 6783046 (-) |
| G422354 | NA | other | downstream | 736389 | 6631086 ~ 6631499 (-) |
| CI01000304_06480836_06483554 | SUB1L2, SUB1A, SUB1 | other | downstream | 884393 | 6480743 ~ 6483986 (-) |
| CI01000304_04661808_04672936 | PPWD1 | other | downstream | 2694941 | 4661766 ~ 4672947 (-) |
| CI01000304_04263955_04264962 | NA | other | downstream | 3102687 | 4263846 ~ 4265201 (-) |
| G422810 | NA | other | upstream | 261337 | 7630159 ~ 7652703 (-) |
| G423386 | NA | other | upstream | 1493401 | 8862223 ~ 8865296 (-) |
| CI01000304_09566730_09575706 | NA | other | upstream | 2199534 | 9566730 ~ 9575706 (-) |
| CI01000304_09737662_09738777 | NA | other | upstream | 2367924 | 9736746 ~ 9738777 (-) |
| CI01000304_10160458_10161768 | VAMP2 | other | upstream | 2784624 | 10160458 ~ 10163762 (-) |
