G422564


Basic Information

Item Value
gene id G422564
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7411356 ~ 7440582 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU485346
ATTTCTTCACATTAAACTGAACTTTTTGGCGGTTTGTAATGAGTTTCTGTGAGTATGTGCAGTAGAAAAAACACAGATTGTGTCGACTTCATATTATTTAATAATGTGATTTAGTAATCACAGACACTAGTCCAAATATCACGATTTGAATTTTATTAAATGTAAAGCCCTACTTTTGATATATACATTCCTTGAAATTCCTTAAAGGTCACCTATTATGCTAAATCCACTTTTACAAGGCGTTTGGATATAAATGTGTTAGCAGTGTGTGAACACAACCACCCCACAATGATAAAAATCCACCCACTTTTTTTTAAAATCCCCATTAAATCGAAGCAGTCTAATTAGACAAGCCATTTTGATTCTCTGAGTAATGTGACGTCACATTACTCATGCCCCGCCCACGGCCGCTGATTGACAGTCCTGTATTACCATGGTTGTACGCTGTCCGCCATTTTCTCCACGGTAGAGCAGCTGTATTGACAACAATGTCTGGTAAGTAATTGAGATGTTTTGTTGTTGGATGTAAGAGTGAATATAACAATCTTCATTTACTGACATCTGAGCCGCTGAACGCAGTGGATTAGTTTTATTTTTGAAGGGAATGCGCCACAGATCTAATATGCACATACGATTTCTGTAACGTTGCCTGCTATTTACGTTCACAGACATAACTGGCTGTGTTTATGTGAACTGTGTGTTTTTGACAGAACCTTGTGTGTATTTGACAGTTTAAACAAAACAAAAAATGTGAAAGAGAAGTCACTCACGAGACTTGACGTCTGACAGCTGTGTGTGTGCGCTTCAGATAAGTGCGCTCAGCAAACAATCCATTAGAAGTTTAAACTGATATCGCTTTAAAACTCGTGGAAATAATAAACTTTAATGATGAAAGAAAAACTGCTATCCGTGAGAGTGATCGTGATATAGATGATAATCAAAACCAAGCAGATGTCTTGTTAATATTTGGCAGAGAATCCGATTGAGGCAGTAACTGTGATCGTAGAGAGGGGGCGGGGCACAAAAGCTCATTTGCATTTAAAGGCACATGCGCGAAAACAGCCTGTTCGCGACTGTAGTCAGAAATGGGTATTTACAACATGGATTTATAAAAGATCTGTGAGGTATTTTAAGCTGAAACTTCACAGACACATTCTGGGGACATCTGAGACTTAAATTACATCTTAAAAAATGGGCATAATAGGGGACCTTTAAATTTCAGTAAAAATGGAAATTATGACATTAATTCCGCAATTTTCAGTTTTTTCAGAGTTTTCAGCATAGCAGAGATCATAGGGCCTTAAATCAAATCAAATACTTTAGTAGAGAATGGTACTATGATGGTAATCTAATCTGTAATTTTTGCAGGCCTAATGCAAGGTATTTTGCAAATACTCACTGAGATGCCTGTGTCCTTATTGAGGATGACCTGTAGGAGATGAGGGGGCAGGATGGGGGGAGATTTGAATTTCTCTTCCTGTTTGGGGACATAAGAGTCCTGATGGTACGGCCCAGGAGGAGAGCTGGACAGATCTATAATCAATAAAGACAATGTGTCACAACAACCCATGACTGACCGTTTTGGTCATTTTCAGTTTTTTGTGATTAAACAGCGCTAAGATATGATGAAATGAAATGTGGAAATGGTTGTGTTCAAACCTGACATGTCAGAGCATTTCTGTGAATCCACCATGAGTGCATCAAACACCTCAAAGTCTGTCTTCTTCACCTGGATGATATTGTTGACCGTGCCGAGCTGGTTGGTCACCACAGGCTAAAGAGAAAAAAAAAAGGTCATTATGCTGGTTTTATAGTACTAATGGACGATGATGACTGATGTCTCTGTCACCTCTGTTGGGTCATGTGTCCACTGTCCATCCACGAAGAATTTATACTGGTGTTCACCCTCAGGCAAATCTACAATTGCCACAAAGTTGTTTTGACTATTAAAGAAACAGAGGTAAAAGAAAAATAATAATGTTAAATGAATGGATTTGAAGTTTATTCTAAAGAAGAAGACTTCTCCACTTGTTACGTACCAGTGTTACATTAGTATTATTTCTGTCATGACAACTCTCAGAGTGTTTGGCATTGTAATGGATATGACTATGTTGATGTTTGGTCTTGGTGGAATAGATCTGCTACGCTGCTGCTGCAGAACAAGTATGGGACTTGCTACTAACAATACATACAAAACACACTGCTGTGAGCAAGTCAGACATGCTGCTGCTGTACAAAATAGCATACATGAATTACCCGTAACAGATCTATACAGGTGGAGGGTTTCTGAATGCACACTGCAAGTGCTACAGTGAATGCTAACCAAGTATTTGAAGGTTGATAGAGCAGGAACTAATCAGCTGTGCCCTATCGAGAATATGTGATTGCAAGCTTATATGAATTATAAGGACCTATCAGTCTGTGCCATCTAGAGTTTCATGACAGAACTTTGTACTTATATATATTAATATTAGCTATATATTTTAATATTTAGTTTTAATTTTATATATTTATTTTTTTACTTTTTTAATAGTTATAGACAGGGCTTGACATTAACTTTTTTGCTCACCAGCCACTGTGGCTAGTGGTTTTTCCAAAGTTACTAGCCACTCAGCACTTTCACTGGCACAATTTTGCTGCAGGGAAATTACATTTTATATGATTAAAGTTGACTTTGGCATGCTTAAATTACTTGATTTTGAGTCATTTTACTTGATTTAAAACCCTTTCCAACTTTCAAATGCAGACTGATCACCCAAAGCAAGACTACATGGTATCAGCTGGTATGTACAGGTGGGCAAGGGGTGGGTAGTATGACCATAATATGAGAAATTTTATAAGTTATTTTTGTTAGGCTATATAAAAAGAACAAAGAAGCAAATTAGCAAATTACAAATACAATAGTAAATTTAAAAAAAAAAAAAAAAATTAATCTTACAGTTTCTCGGTAGACAATCATTCATAGACTTACATTGAATGATTGTCAATAAACGTTTAGAAATTCACACTCCAACCATCAAACTATTTAAATATAAACACACATAAGAATATGTTTATTCTGTTCTTATAATTACCTAGCAACGTCATAGCAACCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU485346 True 3096 lncRNA 0.37 2 7411356 7440582

Neighbor

gene id symbol gene type direction distance location
CI01000304_07325899_07328203 NA coding downstream 83153 7325648 ~ 7328203 (-)
CI01000304_07303509_07309222 STARD7 coding downstream 99645 7302824 ~ 7311711 (-)
CI01000304_07282197_07285838 NA coding downstream 125518 7281481 ~ 7285838 (-)
CI01000304_07218265_07232779 SMARCAD1B coding downstream 178577 7218220 ~ 7232779 (-)
CI01000304_07212382_07216898 SKA1 coding downstream 194458 7211830 ~ 7216898 (-)
CI01000304_07464639_07466430 NA coding upstream 23653 7464235 ~ 7466430 (-)
CI01000304_07612069_07709665 NA coding upstream 171487 7612069 ~ 7709665 (-)
CI01000304_07961608_07968820 NA coding upstream 520983 7961565 ~ 7968949 (-)
CI01000304_08165245_08217042 NA coding upstream 724615 8165197 ~ 8217042 (-)
CI01000304_08218405_08218927 NA coding upstream 777052 8217634 ~ 8218927 (-)
G422536 NA non-coding downstream 42534 7367888 ~ 7368822 (-)
G422528 NA non-coding downstream 56970 7352664 ~ 7354386 (-)
G422521 NA non-coding downstream 70657 7338888 ~ 7340699 (-)
G422442 NA non-coding downstream 85797 7322023 ~ 7325559 (-)
G422512 NA non-coding downstream 134110 7276999 ~ 7277246 (-)
G422808 NA non-coding upstream 162939 7603521 ~ 7607629 (-)
G422840 NA non-coding upstream 310689 7751271 ~ 7751647 (-)
G422895 NA non-coding upstream 393210 7833792 ~ 7834067 (-)
G422843 NA non-coding upstream 460891 7901473 ~ 7902763 (-)
G422846 NA non-coding upstream 472852 7913434 ~ 7914953 (-)
G422378 NA other downstream 628310 6744679 ~ 6783046 (-)
G422354 NA other downstream 779857 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 927861 6480743 ~ 6483986 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 2738409 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 3146155 4263846 ~ 4265201 (-)
G422810 NA other upstream 189577 7630159 ~ 7652703 (-)
G423386 NA other upstream 1421641 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 2127774 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 2296164 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 2712864 10160458 ~ 10163762 (-)

Expression


Co-expression Network