G421446


Basic Information

Item Value
gene id G421446
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7499483 ~ 7500085 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU484033
GACAAACTGAGTAAAAACTTACCACTGAGAAATGTTCTGCTCAAGACGTCTTTGCGATGGAGATTTGGTTGAATAACTAGTTCTTCCAATGTTTCATCATCACTCAAATCGATATCGTAAAAACGATGCCATCGTTACTGTCCTTACAGTGTGTCAAATTACTAAGGATTGAGGAAGCTTTCGGCGTAGCAATTCAGATATGGTAAATGGCGTTTCGTTTCTGACACATGTTGTAAGCAGTAGACCAAATCACAACAGACTGGGCCATCTGACCAATCAGAGCAGAGTAGGCTCACGGAAAGGAGGGGTTTAGTGAGACTGAATATTCGAATGAGTCGTTTTAGACTCTTTGAGAAATGTGGTGATGTGTAATGTATATTATGAGAAAATGAAAGTGCACTTTAACACATTATATTATTATGGCAGACAAGTGAATCATTGAATAGATATAAGGTTGCTTTAAATGTCAAAATACTGTTTGTTATATTTCCTTGTCAGGTCGACTTAAGTTTTCATTGTTTGTCAGTTTAAACATAGGTGAATGCAGAGACATTTTTAGTAACTCATGCCATGAGCACCAAATTTATACTACATTTTAATGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU484033 True 603 lncRNA 0.37 1 7499483 7500085

Neighbor

gene id symbol gene type direction distance location
CI01000304_07436662_07442126 PRKAB1A, PRKAB1 coding upstream 56791 7436662 ~ 7442692 (+)
CI01000304_07409324_07425656 PHF24 coding upstream 73456 7407720 ~ 7426027 (+)
CI01000304_07352697_07354032 NA coding upstream 145087 7352621 ~ 7354396 (+)
CI01000304_07334198_07342123 PIGO coding upstream 157185 7334062 ~ 7342298 (+)
CI01000304_07314354_07323703 SLC20A1.L, SLC20A1.S, SLC20A1B, SLC20A1 coding upstream 174865 7313697 ~ 7324618 (+)
CI01000304_07890347_07902088 PPP2R2AB, PPP2R2A coding downstream 390262 7890347 ~ 7902758 (+)
CI01000304_07909498_07914625 BNIP3LB coding downstream 409413 7909498 ~ 7915942 (+)
CI01000304_07927790_07957821 DPYSL2A, DPYSL2B, DPYSL2 coding downstream 427705 7927790 ~ 7958462 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A coding downstream 478993 7979078 ~ 7980735 (+)
CI01000304_07989774_08014921 IGSF9A coding downstream 488817 7988902 ~ 8015304 (+)
G421443 NA non-coding upstream 3087 7496030 ~ 7496396 (+)
G421440 NA non-coding upstream 8182 7491088 ~ 7491301 (+)
G421436 NA non-coding upstream 14522 7484753 ~ 7484961 (+)
G421434 NA non-coding upstream 15795 7483475 ~ 7483688 (+)
G421386 NA non-coding upstream 33713 7283206 ~ 7465770 (+)
G421447 NA non-coding downstream 978 7501063 ~ 7501334 (+)
G421448 NA non-coding downstream 1276 7501361 ~ 7501615 (+)
G421449 NA non-coding downstream 2637 7502722 ~ 7503033 (+)
G421450 NA non-coding downstream 4112 7504197 ~ 7504403 (+)
G421451 NA non-coding downstream 4406 7504491 ~ 7504735 (+)
G421435 NA other upstream 14795 7484141 ~ 7484688 (+)
G421162 NA other upstream 1256486 6241233 ~ 6242997 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other upstream 2322692 5173426 ~ 5176791 (+)
G420445 NA other upstream 3195651 4303336 ~ 4303832 (+)
CI01000304_08232073_08235598 NA other downstream 731909 8231293 ~ 8235655 (+)
CI01000304_08671901_08672203 NA other downstream 1171685 8671770 ~ 8672555 (+)
G423614 NA other downstream 1448951 8949036 ~ 8949422 (+)
CI01000304_09564068_09565679 HRH2B other downstream 2064520 9561005 ~ 9565778 (+)

Expression


Co-expression Network