G422843


Basic Information

Item Value
gene id G422843
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7901473 ~ 7902763 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU485635
TTTAATTGTTTGTTCCGTTTATAAATACCATTTCATTATAATCTCTATAATCCTTCTCAACTTGTAATTCTTGAGATAGAGAGGAGAGTGTAGACAGAAATTGGGCATGGATCACAAAGGAAAATAAACCCTGTAAGGCTGAATGACTCGTACATGAGTGAGCAGTCCAACTGGAGTGTATGTGCTTGAACAAATGTAGATGTTAGACTACTACAGCAAACACGGCAATTCCGTCTGTGCCACAAAAAAAAGAACAGGAAAAGCTCTTTGGGCCAATGTGATGGTGGTGGGTATGAGTGCGTGGATTTCTGAAAAGAAACATGTCCGAAACCATCCAGAGAGGTATGGAGTGTAACGGGCCATAATGAAATGTATAAAGTAGTAAACAAAAAAAAAAAAAAAAAAAAAAATGTTCAGAAACACTTATTCTTGAAACAGAATTAAAACAAACTAAACAACTTGGCAGTTTCTCTGAGAAGATTAAAAAACGGTTACAATGGCACAAACAACATATCGAGGATTAAAGGACACAGGGACACATCCACATGAGTTCAAATTAATTTTATACAGACACCTTGAATAAACCGAAGCCAAAAAAAAACTAAAGAAAAAAAAAAAAAAAACTATGGTTGAAATCTGTCAGAGATTGCCGCCCATTTCGTCCTTGGGCTCGGACTTGTGGGTAAGGGGAAAAGGGATGGAGGGTACAGACACATGTTGGCACAACATCACCAGAGCAAGGCGCGTGTCATGGTGCCACAGAGGCCAAAGCCAGGTTGCACTCTTCTCCAGACCAGTTTGAACCAGTTAACTCAGTATTGTGGCAGCCGCTAATAGGCTCGACTAGTTCATCCTGTCCTGGAGTAGGCCAAGGTTGGTTATGTGATGATGGTGGTTGTCACAGAAATGATTTTTGCTAGTTCATCTTTTTTGTTTCCACATAGAGAGAGAGGTTCGGAGGTTTTCTTTCCCCATGACGACAGTATTAGTTCACTTTTTCCTGGAAGATGTAGAGGTTGTTGGTGGTTGCCACAGCGATGATATTTTCCTGCGGGTGCCAGGCGGTGTGTAGGATCTTCTTATTGAAGTCCAGGCTGTCCACACTGATCTCATCCTTCTTCCGTTTGCCGCCTGCACAAACCCTGCGTGGCTTCAGGACCTGCCGGGGCTTGCAGCTCTCGCGCGAAGCCTCCAGGGTGACGTCCCGCCGCTGGGTGCGATCCAACATTCGGAAGAAGTTATTGTAGGATCCAGT
>TU485637
TTTAATTGTTTGTTCCGTTTATAAATACCATTTCATTATAATCTCTATAATCCTTCTCAACTTGTAATTCTTGAGATAGAGAGGAGAGTGTAGACAGAAATTGGGCATGGATCACAAAGGAAAATAAACCCTGTAAGGCTGAATGACTCGTACATGAGTGAGCAGTCCAACTGGAGTGTATGTGCTTGAACAAATGTAGATGTTAGACTACTACAGCAAACACGGCAATTCCGTCTGTGCCACAAAAAAAAGAACAGGAAAAGCTCTTTGGGCCAATGTGATGGTGGTGGGTATGAGTGCGTGGATTTCTGAAAAGAAACATGTCCGAAACCATCCAGAGAGGTATGGAGTGTAACGGGCCATAATGAAATGTATAAAGTAGTAAACAAAAAAAAAAAAAAAAAAAAAAAATGTTCAGAAACACTTATTCTTGAAACAGAATTAAAACAAACTAAACAACTTGGCAGTTTCTCTGAGAAGATTAAAAAACGGTTACAATGGCACAAACAACATATCGAGGATTAAAGGACACAGGGACACATCCACATGAGTTCAAATTAATTTTATACAGACACCTTGAATAAACCGAAGCCAAAAAAAAACTAAAGAAAAAAAAAAAAAAAACTATGGTTGAAATCTGTCAGAGATTGCCGCCCATTTCGTCCTTGGGCTCGGACTTGTGGGTAAGGGGAAAAGGGATGGAGGGTACAGACACATGTTGGCACAACATCACCAGAGCAAGGCGCGTGTCATGGTGCCACAGAGGCCAAAGCCAGGTTGCACTCTTCTCCAGACCAGTTTGAACCAGTTAACTCAGTATTGTGGCAGCCGCTAATAGGCTCGACTAGTTCATCCTGTCCTGGAGTAGGCCAAGGTTGGTTATGTGATGATGGTGGTTGTCACAGAAATGATTTTTGCTAGTTCATCTTTTTTGTTTCCACATAGAGAGAGAGGTTCGGAGGTTTTCTTTCCCCATGACGACAGTATTAGTTCACTTTTTCCTGGAAGATGTAGAGGTTGTTGGTGGTTGCCACAGCGATGATATTTTCCTGCGGGTGCCAGGCGGTGTGTAGGATCTTCTTATTGAAGTCCAGGCTGTCCACACTGATCTCATCCTTCTTCCGTTTGCCGCCTGCACAAACCCTGCGTGGCTTCAGGACCTGCCGGGGCTTGCAGCTCTCGCGCGAAGCCTCCAGGGTGACGTCCCGCCGCTGGGTGCGATCCAACATTCGGAAGAAGTTATTGTAGGATCCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU485635 False 1255 lncRNA 0.43 2 7901473 7902763
TU485637 True 1256 lncRNA 0.43 2 7901473 7902763

Neighbor

gene id symbol gene type direction distance location
CI01000304_07612069_07709665 NA coding downstream 191808 7612069 ~ 7709665 (-)
CI01000304_07464639_07466430 NA coding downstream 435043 7464235 ~ 7466430 (-)
CI01000304_07325899_07328203 NA coding downstream 573270 7325648 ~ 7328203 (-)
CI01000304_07303509_07309222 STARD7 coding downstream 589762 7302824 ~ 7311711 (-)
CI01000304_07282197_07285838 NA coding downstream 615635 7281481 ~ 7285838 (-)
CI01000304_07961608_07968820 NA coding upstream 58802 7961565 ~ 7968949 (-)
CI01000304_08165245_08217042 NA coding upstream 262434 8165197 ~ 8217042 (-)
CI01000304_08218405_08218927 NA coding upstream 314871 8217634 ~ 8218927 (-)
CI01000304_08329095_08386362 GFRA2B, GFRA2 coding upstream 426332 8329095 ~ 8386362 (-)
CI01000304_08510508_08532975 NA coding upstream 607707 8510470 ~ 8533026 (-)
G422895 NA non-coding downstream 67406 7833792 ~ 7834067 (-)
G422840 NA non-coding downstream 149826 7751271 ~ 7751647 (-)
G422808 NA non-coding downstream 293844 7603521 ~ 7607629 (-)
G422564 NA non-coding downstream 460891 7411356 ~ 7440582 (-)
G422563 NA non-coding downstream 464673 7434356 ~ 7436800 (-)
G422846 NA non-coding upstream 10671 7913434 ~ 7914953 (-)
G422841 NA non-coding upstream 13725 7916488 ~ 7919790 (-)
G422918 NA non-coding upstream 26206 7928969 ~ 7929506 (-)
G422920 NA non-coding upstream 59607 7962370 ~ 7962729 (-)
G422931 NA non-coding upstream 67725 7970488 ~ 7970694 (-)
G422810 NA other downstream 248770 7630159 ~ 7652703 (-)
G422378 NA other downstream 1118427 6744679 ~ 6783046 (-)
G422354 NA other downstream 1269974 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 1417978 6480743 ~ 6483986 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 3228526 4661766 ~ 4672947 (-)
G423386 NA other upstream 959460 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 1665593 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 1833983 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 2250683 10160458 ~ 10163762 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 2287811 10190574 ~ 10192357 (-)

Expression


Co-expression Network