G422946


Basic Information

Item Value
gene id G422946
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8014042 ~ 8016684 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU485745
TAGTATATCTACACACCAACACAAATAAATGTTTTATTGTCTTTAATCAATATATAAATCCTCATTCATGAAACTCATACTTTTATAAAGTAACAAAAATGTAAGTACAAATTGTTTCCAAAAACACAATAATTGGGTTGCAAAAAATTGGAACAATTCTCATTTTCTACTAAGAAAAGACCTTCATTTGTACAGTCTTGTTTGAATAAGCTTTGATTTAAAAGCTAAAAGATAACGATTAATTACATATAGACATATTTGCAAAGATACTATATTCAAAGAATTTCCCATTCGGCAGTAGCTGCAGACATTTCATACTGACAGAAAATGAAGACTAGTGGAATTTATGTCTGTGCATTTATAGTGGGTTTTTTTTAGAATTCTGAACCAATAAAAAGCATATGAAGTATAATTTAATTGCTTTTAAATTTGTATTTGGAAAGAAAAGTATTTGAGCTGTAAAATGTTTGGTTTAACTGTAAACAGTCAAGCTCTGTTCGTTAATGTAACTTTGTATTGTCAGACTCATCAGCGGCCAGACCACAGGGCGCTGTGATACATAATTAACTCCCGTGACCTGCAGTGAATTTAATCATTTCCTTCAGTTGCACTCTAAAAGAGTATCTGTTTATCAGATTCCTCCTAAAAAAAGGACACCGATGCAAATAATCAACCAATTTTACACATTATTTCTCATTAAATGTCTCAAATGTCATAGTCAGACACCACAGCTCATTAAAACTCAAAAATGAGCTCTTTTGGATGAGAATCACTTCCCAACATTTCAAACTCTAAAACAAAAAGACTGCAATACCATTAACAAAAATGAAAAAAGAAAGCTTCAGCATTTGACTGGAGGTTTTAAACTTTCAAAGGGTTTTATCGATTGTCAGTCAAGGACCAGATGGTGCATAACCATATACTGATCAATATGCAGTGTTTTTTCTCCATGTGAATGACAATGTACAATTTCTATGAATGGTGCCATTGGGATTATAGCATGTATGAGGTAGGTACGAGTGGGTGGGAAGGCCAAATGATTGTCAAGAAAACTGAAGTTTCTGCCAAAGCAGTACTCCAATCACATCTAATGAATCTCCAATTTGCTTGACAACTTGAAGGTATAGCTACAAATTATACTTTTTTCAGCATCCTGTTTTGCATGATATTTCTATAGGCCTAACTGTGCATAAAAGAGCTTTGGCGAGGTTTTTAAATCATAATCTGCTCTTAGTGTCAAAATAGGAATTACAGAACAATCAAACGCCACTCAAAATCAACTTTGAAAGGGGCTCATTGTAACAGCTTTAACAATTTTATTTCAAATTCAGTTTCATCAGCAACAGCAGGGTGCAAAGAGCAATGTCCTGTATTATTTATTCTCCCTTTGATCCAGCACATATTATGTAAGCTCTTTAGACTACAGTTATCTTCGCTGTGCCTTGGTCCATCCATCAGATAATGTCATTTCCATTAGTTGGGCAGAGTATGTTCTTAGGTTCCAAGTGTGCTTGAGTGGTCCTGAGACATCCAATTAATGGTGACACCCAGTGTCTCCTCTTATCTTGACCATACAGATCTGTGTTGAGGGGAAACATGCTGTATCCAATTGTTAGTAATCAGAAAAGCACAGTGTCAGGCTCTGGGTCTGGGAATGATGTGAAGCTCTTCTGAATTTCCTGAGCCAGGAGTGATTCTTGCTCACAGTTTGGAGGAAGAATACTGGGAAGTTCAAAGAGTGGTACAGATTCCTTCAAACCAGCCAGAGGGTAAAGATCTTGGGTCAAAAGACAATGGAGATGAATAAAATCAGAAAGAGCAAAAAGTTTGGAATACATTACAGTTCCGATTCTTTGAACTGGTCTTCATAATTTGACTCTCACAATCACAACCCTCGCAAAAAGAGCTGCATTGTTACCAAGGTACAGTGATGCTGTATTATATAATGATTATTACCATATTCATATACCGTTGTATTTGCATGGTACACCAAGGTTTGTTAAACAACACCATGGTAGTACTTTAGGTTTCAAGTCTAAATCTGGCCTGCCATTATCTTTGGTAGATCTGCCCTGCTTCCTTTGACTCAGGAGATCTCTTCGTAGACCTTCCTTGCTCATTGACACTTTGAGGTCCACAGGATGCATTTGGACGTAAGCAGAGTCATAACTCTCCCACTCATAACTTTCATCCACAGAGCCTCTTCTAGATAAGTCAGAAGATAAAGTAATGTGCTGTATTGTTGAGTCTAATGTGACACATGGATACACTTACATAAATGTACTGGGGCATTGTGACATTTACAAAAACATATTACTATCGCAAATCCCTGCCCCCCACATTGGTTATTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU485745 True 2352 lncRNA 0.36 3 8014042 8016684

Neighbor

gene id symbol gene type direction distance location
CI01000304_07961608_07968820 NA coding downstream 45093 7961565 ~ 7968949 (-)
CI01000304_07612069_07709665 NA coding downstream 304377 7612069 ~ 7709665 (-)
CI01000304_07464639_07466430 NA coding downstream 547612 7464235 ~ 7466430 (-)
CI01000304_07325899_07328203 NA coding downstream 685839 7325648 ~ 7328203 (-)
CI01000304_07303509_07309222 STARD7 coding downstream 702331 7302824 ~ 7311711 (-)
CI01000304_08165245_08217042 NA coding upstream 148513 8165197 ~ 8217042 (-)
CI01000304_08218405_08218927 NA coding upstream 200950 8217634 ~ 8218927 (-)
CI01000304_08329095_08386362 GFRA2B, GFRA2 coding upstream 312411 8329095 ~ 8386362 (-)
CI01000304_08510508_08532975 NA coding upstream 493786 8510470 ~ 8533026 (-)
CI01000304_08567281_08570808 PBDC1 coding upstream 550510 8567194 ~ 8570808 (-)
G422939 NA non-coding downstream 9441 8002400 ~ 8004601 (-)
G422935 NA non-coding downstream 32101 7981730 ~ 7981941 (-)
G422933 NA non-coding downstream 37651 7975943 ~ 7976391 (-)
G422931 NA non-coding downstream 43348 7970488 ~ 7970694 (-)
G422920 NA non-coding downstream 51313 7962370 ~ 7962729 (-)
G422951 NA non-coding upstream 12526 8029210 ~ 8029483 (-)
G422957 NA non-coding upstream 27839 8044523 ~ 8044813 (-)
G422959 NA non-coding upstream 34410 8051094 ~ 8051602 (-)
G422960 NA non-coding upstream 36926 8053610 ~ 8053832 (-)
G422967 NA non-coding upstream 47974 8064658 ~ 8064909 (-)
G422810 NA other downstream 361339 7630159 ~ 7652703 (-)
G422378 NA other downstream 1230996 6744679 ~ 6783046 (-)
G422354 NA other downstream 1382543 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 1530547 6480743 ~ 6483986 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 3341095 4661766 ~ 4672947 (-)
G423386 NA other upstream 845539 8862223 ~ 8865296 (-)
CI01000304_09566730_09575706 NA other upstream 1551672 9566730 ~ 9575706 (-)
CI01000304_09737662_09738777 NA other upstream 1720062 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 2136762 10160458 ~ 10163762 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 2173890 10190574 ~ 10192357 (-)

Expression


Co-expression Network