Gene
RNA
| Item | Value |
|---|---|
| gene id | G423020 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 8160555 ~ 8161691 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU485820 | True | 1137 | lncRNA | 0.57 | 1 | 8160555 | 8161691 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_08120416_08124549 | LRRTM4L1 | coding | upstream | 35958 | 8120416 ~ 8124597 (+) |
| CI01000304_07989774_08014921 | IGSF9A | coding | upstream | 145251 | 7988902 ~ 8015304 (+) |
| CI01000304_07979388_07979919 | TMEM230, TMEM230A | coding | upstream | 179835 | 7979078 ~ 7980735 (+) |
| CI01000304_07927790_07957821 | DPYSL2A, DPYSL2B, DPYSL2 | coding | upstream | 202093 | 7927790 ~ 7958462 (+) |
| CI01000304_07909498_07914625 | BNIP3LB | coding | upstream | 244613 | 7909498 ~ 7915942 (+) |
| CI01000304_08222591_08229908 | NA | coding | downstream | 60900 | 8222591 ~ 8230947 (+) |
| CI01000304_08232073_08235598 | NA | coding | downstream | 69602 | 8231293 ~ 8235655 (+) |
| CI01000304_08547909_08562342 | XPO7 | coding | downstream | 386218 | 8547909 ~ 8562604 (+) |
| CI01000304_08582404_08594691 | DMTN | coding | downstream | 420713 | 8582404 ~ 8594884 (+) |
| CI01000304_08624038_08653167 | PPP3CCA, PPP3CCB, PPP3CC, PP2BC | coding | downstream | 462347 | 8624038 ~ 8653550 (+) |
| G423046 | NA | non-coding | upstream | 7319 | 8152857 ~ 8153236 (+) |
| G423043 | NA | non-coding | upstream | 9385 | 8150802 ~ 8151170 (+) |
| G423041 | NA | non-coding | upstream | 12115 | 8148071 ~ 8148440 (+) |
| G422972 | NA | non-coding | upstream | 91156 | 8069062 ~ 8069399 (+) |
| G422966 | NA | non-coding | upstream | 95132 | 8064658 ~ 8065423 (+) |
| G423011 | NA | non-coding | downstream | 57923 | 8219614 ~ 8220183 (+) |
| G423085 | NA | non-coding | downstream | 113929 | 8275620 ~ 8279848 (+) |
| G423093 | NA | non-coding | downstream | 131196 | 8292887 ~ 8293121 (+) |
| G423099 | NA | non-coding | downstream | 149181 | 8310872 ~ 8311078 (+) |
| G423101 | NA | non-coding | downstream | 150723 | 8312414 ~ 8312712 (+) |
| G421435 | NA | other | upstream | 675867 | 7484141 ~ 7484688 (+) |
| CI01000304_07352697_07354032 | NA | other | upstream | 806223 | 7352621 ~ 7354396 (+) |
| G421162 | NA | other | upstream | 1917558 | 6241233 ~ 6242997 (+) |
| CI01000304_05173869_05175309 | NRARP, NRARP.L, NRARPA, NRARPB | other | upstream | 2983764 | 5173426 ~ 5176791 (+) |
| CI01000304_08671901_08672203 | NA | other | downstream | 510079 | 8671770 ~ 8672555 (+) |
| G423614 | NA | other | downstream | 787345 | 8949036 ~ 8949422 (+) |
| CI01000304_09564068_09565679 | HRH2B | other | downstream | 1402914 | 9561005 ~ 9565778 (+) |
| G424246 | NA | other | downstream | 1958708 | 10116343 ~ 10127322 (+) |
