Gene
RNA
| Item | Value |
|---|---|
| gene id | G423588 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 8671798 ~ 8672580 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU486441 | True | 783 | lncRNA | 0.48 | 1 | 8671798 | 8672580 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_08605819_08615439 | HTR7B | coding | downstream | 53831 | 8604875 ~ 8617967 (-) |
| CI01000304_08567281_08570808 | PBDC1 | coding | downstream | 100990 | 8567194 ~ 8570808 (-) |
| CI01000304_08510508_08532975 | NA | coding | downstream | 138772 | 8510470 ~ 8533026 (-) |
| CI01000304_08329095_08386362 | GFRA2B, GFRA2 | coding | downstream | 285436 | 8329095 ~ 8386362 (-) |
| CI01000304_08218405_08218927 | NA | coding | downstream | 452871 | 8217634 ~ 8218927 (-) |
| CI01000304_08680653_08681838 | NA | coding | upstream | 7551 | 8680131 ~ 8682389 (-) |
| CI01000304_08692093_08712203 | NA | coding | upstream | 19379 | 8691959 ~ 8712203 (-) |
| CI01000304_08727439_08731885 | NA | coding | upstream | 54736 | 8727316 ~ 8732117 (-) |
| CI01000304_08754563_08783858 | LOXL2A, LOXL2 | coding | upstream | 81413 | 8753993 ~ 8783858 (-) |
| CI01000304_08789401_08798907 | TACC1 | coding | upstream | 116648 | 8789228 ~ 8799033 (-) |
| G423557 | NA | non-coding | downstream | 129112 | 8542460 ~ 8542686 (-) |
| G423551 | NA | non-coding | downstream | 157557 | 8513906 ~ 8514241 (-) |
| G423529 | NA | non-coding | downstream | 193134 | 8478182 ~ 8478664 (-) |
| G423524 | NA | non-coding | downstream | 197922 | 8473674 ~ 8473876 (-) |
| G423521 | NA | non-coding | downstream | 204526 | 8467040 ~ 8467272 (-) |
| G423589 | NA | non-coding | upstream | 96 | 8672676 ~ 8673012 (-) |
| G423615 | NA | non-coding | upstream | 276464 | 8949044 ~ 8949311 (-) |
| G423960 | NA | non-coding | upstream | 335028 | 9007608 ~ 9008693 (-) |
| G423972 | NA | non-coding | upstream | 365033 | 9037613 ~ 9098217 (-) |
| G424004 | NA | non-coding | upstream | 489222 | 9161802 ~ 9162014 (-) |
| G422810 | NA | other | downstream | 1019095 | 7630159 ~ 7652703 (-) |
| G422378 | NA | other | downstream | 1888752 | 6744679 ~ 6783046 (-) |
| G422354 | NA | other | downstream | 2040299 | 6631086 ~ 6631499 (-) |
| CI01000304_06480836_06483554 | SUB1L2, SUB1A, SUB1 | other | downstream | 2188303 | 6480743 ~ 6483986 (-) |
| CI01000304_04661808_04672936 | PPWD1 | other | downstream | 3998851 | 4661766 ~ 4672947 (-) |
| G423386 | NA | other | upstream | 189643 | 8862223 ~ 8865296 (-) |
| CI01000304_09566730_09575706 | NA | other | upstream | 895776 | 9566730 ~ 9575706 (-) |
| CI01000304_09737662_09738777 | NA | other | upstream | 1064166 | 9736746 ~ 9738777 (-) |
| CI01000304_10160458_10161768 | VAMP2 | other | upstream | 1480866 | 10160458 ~ 10163762 (-) |
| CI01000304_10191594_10192287 | RNASEKB, RNASEK | other | upstream | 1517994 | 10190574 ~ 10192357 (-) |
