G424051


Basic Information

Item Value
gene id G424051
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9316659 ~ 9374445 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU486946
GTCTGTCCAGATGTAACAAATGATTTATACAAAATAGTGATGGATCAAAGAAAATGAGAAAATATACAACATAATATCTGCTAAAATAATGTGGGCCCGTTTTTTGGATTTTTTTTTTCTTTTCCTTTTCTTCTTTTTTTCCTCCTTTTACATTATCAGGTTATCTGTTCGTTTTAGTAGGCGCCAGAACACCAACCATGCCGTAATTGTTAAAGGTCCAAAATATCATTGATTTGCAGCTTGTCTTTCTAAAAACCAATCTGCTATTAAAATATGACTGGACAAAATGGAAAGAAATTAGAGGCTTGTAGTCTGTGGCAGGTCACAGGCTCAGGGATGTGACTTCTAAAAGGGAATTAAACAGCCAAACTGACATATATTCACTCACACATCACAGTTAACACAGTAACCCCCCACCCCATAATCGGTCCCTAAGGACATTCCCATGCATGTGTTCTGCCGGTAAAGCCGCAGTATACCAATGAGTGCTGAAGGCTTGAGCTAAGATTTTATGTTCGGAAACAGCAGGAGGCTGAAAGTTAGGGTCCAGATGCTGGTACACTGTGCTCACATCTCACAAACTGCAAAATTCAGGCACTCATATATAGTTTATTTCGAGAAGTAGCATCTCCTGGGGGCTGAGGAAAACAAGTGAGGGAAATGTACTGTAAAAGACGGTTCTTTGTCTTCATGGAGGGATGGGTCCAGTTACTAATATGGTCCATTTGAGAGCAAGACACGCCTCAACGTGGGCACAATGTGATGGGAGGAGCAGGGTGTACCGCTGGCTCAGAGTGCATCACCACCACACTGGTTTACAGCAGAAACAAGGCAACAAATCAAGTCTGGGCTAACCAGGAAATTAAAACGCAGGCCTGGCAATGGGCTTGAGGTGGCTAGGTAAGCAGTACTGCTCTAATAGTTTGCTACTGCTTTCTTCATACACTGAATAAGAGAAAATATAATACATTTTGAATAAAATACAACAGCAGCAGATGCCATTATAAAAGGAGAGGCAAAAGGAAGAAAGGAGTGAGATTAGAAGGGAAGAAAAAGTAGATCTGAAAGCCTAGAGTGTTTTGTGAAGAGCTGAGGCAGGACAGGCAGACGGGCCATGGCCATGCTGTTGCGATGACCTGCTAATTAGTGGAGAGGAGAAAACTCTGCCTCTTCCAGTCCAGAGATGGAGTCGCTGTATTCTAAAGCCAGGGACACGCAGACCATCCGCCATCTTCTCAAATTCTTATTCTCCCTCCTGCTGATTCGATCTCCTTCGCTCCCCTGCCGTTTGCGGGGTAGGTGAAGGGGGGGAAATCTTATATTTGAATTGTGTGTCAGTCCCGACTACCTAGTAGTCATCTAAATCAAAGAACTCATCATCATCTCCCTGGTACTCCATGCCTTGGAAATCCACCCGGTACCTCAAGATTCCACCGATGCCTCCGAAGCCTTTCACAAACTGCGAGCCCTCCTGACTTTTGTCTGTAACGATTTCCAGCGTGGCCCCAAACTTCTTGTAGTTATTGGCGAACCACTCAAGCAGTGGCATGCTCTCGATCAGCTCATGCTCCTGACCTGTCTCTTTGTCAGTGAAATGAGACTTGTCCTTCTCCTGTTCTGGTGTCAGATAGAGTATCTTTTCATCGTTTTCAGGTGTAGTATTTTCTCCATGACAACGTAGGACATAACGCATAGTGTCCAGGTTCTCGTAAACTATAAGAATCTCCACTGCTCCCATCTCCAGTGCTTTGAGTGTGTCTTCCACTCCAAAACAATACTTCCCTGTGTCCTGACTGATCTCATCAAAATATCGGCCTATTAGTTTCTTTTCTTGGATGAACTTGACATTGGACAGAACTTCCGCCGAGAGCTCAATGGCCTGGTTGAAACCGTTCTCTCCTCCATATGATATGTCAACCAGCTTCAGAA
>TU486947
AAAAAAAAAAAAAAAAAAAGTTCCCAGCATGTCTATCACCTTTATCAAGCCTGTAAATGCTTCTTGGATTAACTACCTATTAGTTTCTTTTCTTGGATGAACTTGACATTGGACAGAACTTCCGCCGAGAGCTCAATGGCCTGGTTGAAACCGTTCTCTCCTCCATATGATATGTCAACCAGCTTCAGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU486946 False 1929 lncRNA 0.44 5 9316659 9323420
TU486947 True 190 lncRNA 0.38 2 9316659 9374445

Neighbor

gene id symbol gene type direction distance location
CI01000304_09284328_09286980 AVD coding downstream 29627 9284189 ~ 9287032 (-)
CI01000304_09046090_09129612 PCDH1 coding downstream 187047 9046090 ~ 9129612 (-)
CI01000304_08913076_08936241 KCNIP3B, KCNIP3 coding downstream 380418 8912702 ~ 8936241 (-)
CI01000304_08904762_08909795 NA coding downstream 406169 8904478 ~ 8910490 (-)
CI01000304_08899490_08900383 NA coding downstream 415887 8899161 ~ 8900772 (-)
CI01000304_09508090_09519201 NA coding upstream 132852 9507297 ~ 9519333 (-)
CI01000304_09566730_09575706 NA coding upstream 192285 9566730 ~ 9575706 (-)
CI01000304_09577749_09578512 NA coding upstream 201674 9576119 ~ 9578512 (-)
CI01000304_09609674_09619712 NA coding upstream 235065 9609510 ~ 9620030 (-)
CI01000304_09622805_09640521 NA coding upstream 247931 9622376 ~ 9640540 (-)
G424091 NA non-coding downstream 14378 9301831 ~ 9302281 (-)
G424089 NA non-coding downstream 20593 9295844 ~ 9296066 (-)
G424088 NA non-coding downstream 23536 9292696 ~ 9293123 (-)
G424079 NA non-coding downstream 52916 9263533 ~ 9263743 (-)
G424075 NA non-coding downstream 60312 9255908 ~ 9256347 (-)
G424110 NA non-coding upstream 6047 9380492 ~ 9400310 (-)
G424123 NA non-coding upstream 40975 9415420 ~ 9418187 (-)
G424066 NA non-coding upstream 66892 9441337 ~ 9504761 (-)
G424072 NA non-coding upstream 67959 9442404 ~ 9449831 (-)
G424071 NA non-coding upstream 68887 9443332 ~ 9450425 (-)
G423386 NA other downstream 451363 8862223 ~ 8865296 (-)
G422810 NA other downstream 1663956 7630159 ~ 7652703 (-)
G422378 NA other downstream 2533613 6744679 ~ 6783046 (-)
G422354 NA other downstream 2685160 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 2833164 6480743 ~ 6483986 (-)
CI01000304_09737662_09738777 NA other upstream 362301 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 779001 10160458 ~ 10163762 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 816129 10190574 ~ 10192357 (-)
G424808 NA other upstream 1069910 10444355 ~ 10542665 (-)

Expression


Co-expression Network