G424054


Basic Information

Item Value
gene id G424054
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9328334 ~ 9331490 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU486952
ACAAGCTGAATTTCTCAGATGAGAAAAATCGGATGTTTACCACACTGAACTAAAGAGAGTGTGACTTTAAACAAACCCCTAACACTACCTAAGGGAAGAATGACTATTGATATTGCTCATATGTAGAGTCACTTAAATCACTGTGAATCGGTTTCAATACAGTCTCAATAGTTTCAGTATTATAATACATGGGGAGAATTTTAACTGTGTAAATCTAAAACTCAAAGCATGTTTCTATTTAAAGACATTTTGAACCCCTTTGTTTGTTGAACTCATGTTACCCCAACCAGTCACAAAATCGTGCATTTGCAAAATGTGATTAAACACGTCATGGGCATAATTCACGAGAACACACTTGATGTCAAATGTGGTTAGCATTTTTAAACGACACCTGCATAAGGATGCAATCAGACTGTGGTTTTTACCAGTGATGACTTCAGTAAACCCACACGAGGTTCACAAGAAACACACAGGCAGAGTGCGGTCACACCTTAATGGAGTTATCTCGTAGTCCGCTGATGATCTTTTCATCGTCATACTGGAGGCAGTAAACACCTTTGCTGTTCTCCGACCTACACTGGATCCTCTGCAGGTTATGTCGGCCACACCTCCAGTTCGCCTCGATGGTCTCGATGTCCTGAATGATTTTCGGATAAAGAGAGCGGTAGTATGAGTTTGGTGGAACTTCTGTTGTGCGGTTCTTGAACAGGTATTTTTCCCACTGGTGTCTCTCTGAAAGGCCTTTCCACAGCGGGTCTGTCCGAACCATCCTCTCGATTAGCTTCTTCCACAACATGCCTTCGGAAATCACACGCTGCCATTCCTTACACACCAGCTCAGCCGAACACAGCGAGCGTGCGTCCAGGAAAGACAAGATATTCTCTGCTATATGATCCAGACCCTGAGCTGGCAGTGCCGTAATGAAGTCCCTTTGGAGCATGGGTTTGAGGTAGGAGTTTATGTGGCCGTGTTGGTAATGGCACATGCGTGAGATCAGGTGTTCCACAAACTCCACTTGGTCTGCTTCAGACCACTGATCAAAGAGCTGGATGCACACGTCCTTCTCCTTCTCGTAATTTCCTTCCGATGGCCGCTTCCTAGAGCCCGTCAAGGGTCCATTAGTCACCTGAGGACAGATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU486952 True 1140 lncRNA 0.45 4 9328334 9331490

Neighbor

gene id symbol gene type direction distance location
CI01000304_09284328_09286980 AVD coding downstream 41302 9284189 ~ 9287032 (-)
CI01000304_09046090_09129612 PCDH1 coding downstream 198722 9046090 ~ 9129612 (-)
CI01000304_08913076_08936241 KCNIP3B, KCNIP3 coding downstream 392093 8912702 ~ 8936241 (-)
CI01000304_08904762_08909795 NA coding downstream 417844 8904478 ~ 8910490 (-)
CI01000304_08899490_08900383 NA coding downstream 427562 8899161 ~ 8900772 (-)
CI01000304_09342385_09345935 NA coding upstream 10364 9341854 ~ 9345935 (-)
CI01000304_09508090_09519201 NA coding upstream 175807 9507297 ~ 9519333 (-)
CI01000304_09566730_09575706 NA coding upstream 235240 9566730 ~ 9575706 (-)
CI01000304_09577749_09578512 NA coding upstream 244629 9576119 ~ 9578512 (-)
CI01000304_09609674_09619712 NA coding upstream 278020 9609510 ~ 9620030 (-)
G424091 NA non-coding downstream 26053 9301831 ~ 9302281 (-)
G424089 NA non-coding downstream 32268 9295844 ~ 9296066 (-)
G424088 NA non-coding downstream 35211 9292696 ~ 9293123 (-)
G424079 NA non-coding downstream 64591 9263533 ~ 9263743 (-)
G424075 NA non-coding downstream 71987 9255908 ~ 9256347 (-)
G424106 NA non-coding upstream 29286 9360776 ~ 9459751 (-)
G424110 NA non-coding upstream 49002 9380492 ~ 9400310 (-)
G424123 NA non-coding upstream 83930 9415420 ~ 9418187 (-)
G424066 NA non-coding upstream 109847 9441337 ~ 9504761 (-)
G424072 NA non-coding upstream 110914 9442404 ~ 9449831 (-)
G423386 NA other downstream 463038 8862223 ~ 8865296 (-)
G422810 NA other downstream 1675631 7630159 ~ 7652703 (-)
G422378 NA other downstream 2545288 6744679 ~ 6783046 (-)
G422354 NA other downstream 2696835 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 2844839 6480743 ~ 6483986 (-)
CI01000304_09737662_09738777 NA other upstream 405256 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 821956 10160458 ~ 10163762 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 859084 10190574 ~ 10192357 (-)
G424808 NA other upstream 1112865 10444355 ~ 10542665 (-)

Expression


Co-expression Network