G424106


Basic Information

Item Value
gene id G424106
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9360776 ~ 9459751 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU487008
CCACCACTGAACCTCCAGTCTGTACTGGATACAGAACCTGAGGAGCGTTGTCATTCTGATCTTGAACAGTAATTTTCACTGTCACGTTACTACTGAGCGGAGGAGAGCCTCCATCTTGCGCTTTTACCCGGAAGTGGAAATGTTTCAGTGTCTCATAGTCAAAAGAGCGCATAGCTGTAATCAGTCCGCTGTCAGGTTGCACTGACACATATGATGAGACAGAGACTCCATTAACAGTGCTGTCTTCTAGAATATATGAAACACGAGCATTCTGATTCCAATCAGCATCACTGGCTTTAACTGAAAATATAGAGAGACCAGGTGTGTTATTCTCCAGCACACAGGCCTCATAGTTAGTTTTCTCAAAGACAGGAGCATTGTCATTCACATCTGATATCTGTAAAGACAGAGAGGCGCTGCTGGAGAGCGCAGGCACCCCCTGATCAGAGCATGTGACACTGATATTGTATTCAGCATCTTTTTCTCTGTCCAGCTGCTGCTCTATACGCAGACTGATGAAATTGCTGGATGGTGATGTAAGAGCAAATGGAATATTGTTATTTATGATGCAGTGGATCTGGCCGTTCACACCTGAGTCAGCATCATCTACTTTCATCATAGCAACAACTGTGCCGGGTGTAGAGTCCTCAGACACAGAGCTTGACATAGAGAGTACGTTTATCACTGGTTTGTTATCATTAATATCCAGCACATCGATAATCAGCTTACAGGAATCAGAAAGCCCCCCTTGATCTTTAGCCTGAATATCAAGCTCATAATGATTTGCTTTTTCAAAGTCGACGAGACCATTTAAGGTGACTTCGCCACTATGCTGATCAATAATAAACATGTTTCGCGCAATATCTTCTGTGCTTGCAATGTAGTACGTCACCTGACCGTAAGATCCTTCGTCTGCGTCAGTAGCACTAACTGTGATCAGTTTAGTCCCTTTCGCTGCATTTTCAGTCAGTGTAGCTTTATATAGTTTTTGCGTAAATACGGGAGAATTATCATTGGCATCAAGTACAGTAACATGTATCTGAACAGTGCCAGACAACTGCGGATCACCGCCATCAGTGGCGTTTAGTTTTATCACGACAGTGCCTCGCGGTGCGTTTTCAGCCAGCTTCACTTTATAAAAGTTCTGATCGAACACAGGCGCGTTGTCGTTGGCATCCAGTACAGTGATGTTTATTTGCACAGTGCCCGACCTCTCTGGCGTGCCTCCGTCCACCGCTGTAAGAACCATCAAGTGAGTCTTCTGCTGCTCCCGGTCCAGCGGACTTTCGAGAATCAGTTCTGCGAACTTACTGCCGTCGCTGCGCGTCTGGACGTCCAGGACGAAGTGTTCGTTTACGCTCAGCAAATACGAGCGCAGAGAGTTGTCACCGACGTCCAGGTCCTGCGCGCTTTCCAGTGGGAAGCGCGATCCAGGCGCGGCGGATTCGGAGATATCCAGGTTAAATTCACTCCATGGAAAGACAGGAGAGTTGTCGTTGACATCTAATATTTCAACTTCGACCCTATACAATTCTAATGGGTTTTCGATCACAACCTGAAGATGGAATGAACAATATGGATTTTGTTCGCACAACTCTTCTCGGTCAATTCTTTCATTGACAAATAAAACCCCGTTTTCTAAATTCACCTCTAAATATTGCCGTTTCGCACCTGAGACTATTCTAAATCGGCGGATTGAGAGTTTGTTGGTGTCTAATCCCAGATCCTCAGCAATATTTCCAACAAAAGCCCCGTGCTCCAGTTCCTCTGGGATCGTGTAACGAATCTGTGCCAGAACTACATCCATCACAGACGCGATGAGCGCCAGGCAGGTTACCTGCCATGTCCATATCCACAGCTCCATTGAAATAGGCTCCT
>TU487006
CCACCACTGAACCTCCAGTCTGTACTGGATACAGAACCTGAGGAGCGTTGTCATTCTGATCTTGAACAGTAATTTTCACTGTCACGTTACTACTGAGCGGAGGAGAGCCTCCATCTTGCGCTTTTACCCGGAAGTGGAAATGTTTCAGTGTCTCATAGTCAAAAGAGCGCATAGCTGTAATCAGTCCGCTGTCAGGTTGCACTGACACATATGATGAGACAGAGACTCCATTAACAGTGCTGTCTTCTAGAATATATGAAACACGAGCATTCTGATTCCAATCAGCATCACTGGCTTTAACTGAAAATATAGAGAGACCAGGTGTGTTATTCTCCAGCACACAGGCCTCATAGTTAGTTTTCTCAAAGACAGGAGCATTGTCATTCACATCTGATATCTGTACACGGAGAGAGACACTGCTGGAGAGCGCGGGCACTCCCTCATCAGTGCATATTACACTGATATTGTACTCAGATTCTCTCTCTCTGTCCAATTCCTGCTCTGTTTGTAGGCTGAAGAAACTGCTAGATTGAGATGTAATAGCAAAGGGAATATCCTCACTTATGAAGCACTGAACCTGACCATTTACTCCTGAATCAAGATCATCAACATTTAGCATTGCAACAACAGTACCAGACTTGGACCCTTCAGATACTGAATGAGAACTTGACAGGATTTGAATACTAGGTGAATTATCATTTATATCCAGCACATCAATAATTACTTTGCATGCGTTAGAGAGTCCTCCTTGATCTTTTGCCTGAATATTAAGTTTATAATGGCTCACCTTTTCATAGTCAACATGACCATTTAATATTACTTCACCAGTTTTTTCGTTAACAAGAAACATGTCGGCCACATTACTGTCCATAGTGTCAGATATGTAGTACGTCACTACACTGTTAGACCCCTCGTCTGCATCAGACGCGCTCACGACTGTTAATATAGTACCCTTTGGTGCGTTTTCTGTTGTGGTGGTTTTATATTCTTTTTGTGTAAAAGCAGGGGCATTATCATTAATATCTAACACAGTAATATGTATCTCTACAGTGCCAGAGAGCACTGGATCGCCTCCATCAAAAGCTTCAAGCAACAAAGTAAACGAGCTTTGCGTTTCTCTATCAAGGGGTTTTTGTAAAATCATCTCGACATTTTTACTACCATCTGCCTGATTGTGCAATTCAAGCCGGAATTTATCAGTCGGTTTAAGCGAGTACCGTTGAAGGCCATTTGTTCCTACATCCGGATCAAAAGCTCTCCCGAGCATAAAACCAGCTCCCGCCACCGCCAATTCGCTGATTTGAAATCTAAAGTCTTTTTTCTGGAAACTGGGAGCGTTATCATTTATATCTGTGATTTGGATTGTAATCGTGTATAATTCCATCGGGTTGTCCAAAATCACTTGAAGATGCAAAGCACACGGAGTTGTTTTTGCACAAAGAGACTCGCGATCCATTTTCTCTTTGATAAGCAGCCATCCCGTGTTTCTGTTCAGTTCGATGTATTCCGTGCTGTCTCTTGTAAATAGCCGCGCTTTTCCTGACTTTAAACGTTGTAAATCCAAGCCCAAATCCTGCGCAATATTTCCCACCATCGATCCTTTTGCCATTTCTTCTGGAATGGAGTAACTGACCTGTCCTCGCGCTATGTGAATCAGAAGACTCAAAAACAGCACCGAGTGCCGTATCATTGCATCAGGCATTGTCTCAACTGCACCGATGGTTAAAAAATGCAACAATCAATCCGTGTATCCTTTAAATATACGAAATTCCAAATGCAGACATTAACTCCATACACGGCGACGAGAGATGAATAGAAGCATCGTGTATGAAAAGAATTTGAGGTGGCAGTTATATACTGCCTTTTTTTCCCCTCCGAGAAATAATGTGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU487008 False 1878 lncRNA 0.46 2 9360776 9459751
TU487006 True 1892 lncRNA 0.42 2 9457034 9459751

Neighbor

gene id symbol gene type direction distance location
CI01000304_09342385_09345935 NA coding downstream 14841 9341854 ~ 9345935 (-)
CI01000304_09284328_09286980 AVD coding downstream 73744 9284189 ~ 9287032 (-)
CI01000304_09046090_09129612 PCDH1 coding downstream 231164 9046090 ~ 9129612 (-)
CI01000304_08913076_08936241 KCNIP3B, KCNIP3 coding downstream 424535 8912702 ~ 8936241 (-)
CI01000304_08904762_08909795 NA coding downstream 450286 8904478 ~ 8910490 (-)
CI01000304_09508090_09519201 NA coding upstream 47546 9507297 ~ 9519333 (-)
CI01000304_09566730_09575706 NA coding upstream 106979 9566730 ~ 9575706 (-)
CI01000304_09577749_09578512 NA coding upstream 116368 9576119 ~ 9578512 (-)
CI01000304_09609674_09619712 NA coding upstream 149759 9609510 ~ 9620030 (-)
CI01000304_09622805_09640521 NA coding upstream 162625 9622376 ~ 9640540 (-)
G424054 NA non-coding downstream 29286 9328334 ~ 9331490 (-)
G424091 NA non-coding downstream 58495 9301831 ~ 9302281 (-)
G424089 NA non-coding downstream 64710 9295844 ~ 9296066 (-)
G424088 NA non-coding downstream 67653 9292696 ~ 9293123 (-)
G424079 NA non-coding downstream 97033 9263533 ~ 9263743 (-)
G424060 NA non-coding upstream 1382 9461133 ~ 9475049 (-)
G424065 NA non-coding upstream 11319 9471070 ~ 9497593 (-)
G424052 NA non-coding upstream 39256 9499007 ~ 9503311 (-)
G424158 NA non-coding upstream 60392 9520143 ~ 9520401 (-)
G424162 NA non-coding upstream 69932 9529683 ~ 9531324 (-)
G423386 NA other downstream 495480 8862223 ~ 8865296 (-)
G422810 NA other downstream 1708073 7630159 ~ 7652703 (-)
G422378 NA other downstream 2577730 6744679 ~ 6783046 (-)
G422354 NA other downstream 2729277 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 2877281 6480743 ~ 6483986 (-)
CI01000304_09737662_09738777 NA other upstream 276995 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 693695 10160458 ~ 10163762 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 730823 10190574 ~ 10192357 (-)
G424808 NA other upstream 984604 10444355 ~ 10542665 (-)

Expression


Co-expression Network