G424065


Basic Information

Item Value
gene id G424065
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9471070 ~ 9497593 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU486965
TTTAAATTTCCTTATTATCCCACACAATTCTACTGCATTTCCCCACACCGAGTTGAGCCATTATGTTGCAGGAGACTATTCAAGGCATGTGCAATGTCACACTGTTATGATCCTCTAAACTCTAGTGCAGATTACACAAAGACAGGCAGCCATTTTGGACTGCATAGCATGCATACAGCTTCATCCAACTGCTTCTATTTCTAAATTATAAGGATTACAAAAGTCAGCTTCATCTGGCTAGAATGTTCGACTATTTTTAATCATAACTCTTCTCAGATTCATATTGTTGAATTATCTGCTGTGTCACTGGGCCTGGAAATAGCTCCAATCATGACCTGATTATTAATACACTTAGCATTACAGAGCTTAGCCCAAAAAGTGAGTCATAGTGACTGAAGCCTGCGTCATTAGTAATTAATGGACATAAACAGCATGATGGAACTTTGTATTGTCAAAGAATCTTGAAAAAATAAAAATATTTCCACAAAAATATTAAGCCAGAACTGTTTTTAACATTGATAATAAGAAATGTTTCTTGAGTACTGTAATTAGCATATTAGAATTATTTCTAAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGCCATCACATGGTTATATTTAAAAATATTTTAAAATAGAACACAAATGCAGTCTTGGTGAGCATAAGTGACTTCTTTCAAAAACATTAAAAAAGCTTACCAACCCCAAACTTTTAAACGCTAATGCATAATGTTTCCTGAAACTCTCACCTTCATGAGTGAGTGAGCGAAGAGTCTTTTTGACAGTCGCATGCTTAGAGTGCTCTGTGGGGCCTTAACAAACACAAAGTCGCTTCTGCTGGAGATGGTGGAGAAACCAGGTGCATATGTATGTTTGTGGAAATCCCGAGAGGCCCCCACGACCTCCATGTATCTAACAGGACCGTCAGTATTTAGCTGCAGGTGGAGGTCATTGTGTTGGTGCTCACGAGGTGCGTGCTTGAAACCAAGTTTTTGCATGAGGCACATGATGTAACCACGGTGGCCGAGCCAGCGCACTGCTATAACAACGATAGCCAGGAATGAAACAGCAATAATGAAGGATAAAGTGATTATAAGATACAAAGTGAGGTCAGGCCCTGTTGGTCTTTTGGAGGTAGAGCTCCTGCGTTCAGAAGAGACGTCTGAGGCTTTTTCAGCCAGGGTGATGTTAACTACCACGCTAGCGGAGAGAGAAGGCCTTCCGTTATCTTTTACAATCACAGTCAGACTAAAGACAGATTTATTGTCCTCTGCTATAAGTTCACGGGCTATACGCAGCTCTCCAGTATGTGCGCCTATGTGAAACATTTCAGCATCAGGGCCTGAGATTCTGTAGAATAACCAGGCATTGTGGCCACTATCACCATCTACAAATGCGATGCGATTGACAAGGTATCCGATACCGGCTGTGCTAGGTACTAAAAACTGTAATGTTTGATCAGATGGGGGTGCAGGGTATATAAGGACAGGAGGGTGATCGTTCTGATCTTTAATAAACACATGCACTGTGGTGTTGGAGCTTTGAGCTGGAGTTCCTCTATCAAGAACCTGCACCACGAATTGAAACGCATTCAGTTGCTCATAGTCAAACTTTCTCATGGCATATATCTGCCCACTATCTGGGTTTATATATACATATGAAGACGCAGACATACCGAGAGCCTCGCTCTCCAGAATTGAGAAAGAAACTGTAGAATTCTCACCCACATCTGGGTCTGATGCAGACACGGACAGAAGGGGAGCATTTGGGGCATTGTTTTCGGCTATGTCTACAGAGTAAGAAGGCTGTGAAAAGACTGGGGGGTTATCATTAACATCTGAAAGACATAACACAAAAGATTCCTGTGAGGAACGAGGCGGGGAACCAGAGTCTGTGGCGATCACAGTGATGGTGTATTCAGCCAAAGCCTCTCTGTCCAGCTGGCCATCAGTCATTAAAGTGAAAAGCCCCTTATATGGTGAACTCATCTTGAAAGGCATTCCATAAGGGATGTCCACACTCACTTCACCATTTTTCCCTGTGTCTTCATCTCTAACTTTGATGAGGGCGATGACAGTGCCTGAACTCACATCTTCAGAGATTACAGGAGAAACCACATTAATGCTGATAACAGGAGTGTTGTCATTCACGTCAATAATCTCGATTTTGATGTTGCACGAGCCCTCCATGGGGGGTGTTCCTTTGTCCCTAGCAAGAATAGTGACGTCATACACGTTAGAGAGCTCGTGATCGACTAGTCCTGTAACTCTAATTTCGCCCGTCATAGAATCCACGCTAAAGAGTTTCAAAACATTATCAGGGGTGTATTTATCGAACATGTAAGATATTTCACCATTTTGACCGTGATCGGCATCGGAGGCATTAAGAGTTGTAACTAATGTTCTATGAGGTGAATTTTCTAAAAGCGTGACTCTTTTTGTAGGATTATGAAAGTGTGGAGCATTGTCATTGACATCTAAAATATTTATAAAAATGGCAGTATTTCCGGACTTTTCTGCACTTCCACCATCAACTGCAGTTAAAATCAACTTAAATTCACTCATCTTTTCTCTGTCAAGAGGCTTGTTTAAGGCTAAAATTGGGATTTTACTTCCATCACTTTTAGTCTCTACTTTTAGAATAAAACAATCGTTTTGACTAAGAAAATAAGCGCGTAGTGAGTTCACACCAACGTCAGGGTCATGCGCACTTTCTAAACGAAACATTGTGCCGGGCGCAGCCGCTTCTGAAACTTCCAAAGAAGTGTTTCGGCTTTGGAAATGTGGCGCGTTGTCGTTAACATCCACAATTTCTATCGTAACGCTGTGCATTTCCAATGGATTTTGAAGTGAAATCTGAATCCTAATATGACAATGTAAACTTCCTCCGCACATACTCTCTCTGTCCACTGTTTGCTTGACCACCAATGCTCCAGATGTCAGGTCTACGTCAAAATATTTATCATTAAATTCCGAGATTATTTGCATCTGTCTTAGAAGTATCACTTGAGCGTCCATTCCTAAATCTTTAGTCAAGTGTCCAACAATAGTTCCTGGTTTAGATTCCTCCGCTGTGGAATATAAAAGTTCCGAAGCGTGCGTTGCCACACACAAAGCATTAAGAACAATCCAAATTGCAGCCCAGTCCAAAGATCTCTGAAAAAGCTCTTTACTCTCCATTTTTAATTGAGTATTTTCACTAGTAGCTATTGACTTCTTCGAGATTTTAATTTATGCATATCCTAGACTGCGCAAGACATTGCCAAGTATGATAGAAATTTTTTGTATCCATGATCTCCACCATTGGCTGTAAGTTTCTAAAATAACAATACAGCTCTTGAGAGCAACAAGTGTGCGGGTCATGGAGAAAAGTGAAAATGGGTGGGGTTAAAATCGTGCGTTTCTATTGGAGGAAAGTTACTTCGCACAGACAAAAGCAAGCATGATGCTGTCCAAGGTGCTGAAAGCACCGTCCCTATTTTACCGTTACGTAAACATAATGTACCATGAATGTATAAACATAATGTTTGAAACGAGTTTGCCTCACCTGTTGGCTCTCAAACGTCCACGCGCTGTCTGGTAATGACGCATCAAGCACGTTTAGAGTGTCTGTAAAGTTTGTGGTGCTGCTGGGCTTAACGAGGGTGAGATCACTGAATTCTGACATTGGAGAGAGATAGGAGCCAAAGGACTGACTCTGAGACATCATGTCTCCTCCCAGAACCTCCACATACTTAATGGGCCCGTCAGTGTTGAGCTGGATCTGCAGGTTTCTGTTGGGGTTCTTGTATCCAGAATCAGTTCTCCTGATACAGCAGCTTGAGCCGCCTCTACTGCCTCGCGCACATTTCACCAATAAGATGAAAAACGTCATCAGACACAACAAGGACACAGAAGCCAAAGAGATGATCAGATATAAAGTAATTTTACCGCTTTTCTTGTTGGGCTCGATAGTTTTCTCACGATAGTCTGAGATGGGCTCATGAAACCCGTCCTCTATCAATATATCCACTGTGACTGTGGTGGACTGGATCGGTTCTCCATTATCCTTTATCTCTATCATCAGTCTCTGAGAGGAGTCATCCTGCTCTGAAACAGCGCGTTTAGTCCTCACCTCTCCCGTATGCAAATTCACACTGAACAGTGACGCGTCCGTGGCCTCCGCGAGCCTGTAGAAGAGCCAGGCGTTATGACCCGAGTCCGCGTCCACTGCTGTTACCTTAGTAACGAGATGTCCTGCTTTAGCAGAACGGGGCATCCTCTGATGAGAAACAGACCCCATGGATGTGGACGGGTAAATGACAGCAGGTGCGTTATCGTTCCGGTCCAGAATAAACACGTGAACAGTGGCGTTGCTGCTCAGAGATGGAGAGCCATGATCTTTAGCTTGAACGAGGATCTGAAACACTTTGATTTTCTCATAGTCAAATGACTGCATGCTAAATATGCTGCCGTTTTCTGCGTTTATGTAAATATAAGAAGATACAGGCACGTCTTGAACTTTAGAGTCCAAAATGGAATAGGAGATTTTAGCATTTTCGCCCAAGTCTGGGTCATGCGCGGATACTGAGCACAATATTGAGTCATGAGCGCTGTTTTCTTTAGCGTAAACCGTATAAGACTTCTCAGAGAACATTGGTGGGTTGTCATTTACGTCTGAAATGCCGATTGTGACTGTTTTCCCACTAGACAGCGGTGGCGAACCAGCATCAACAGCGTTTAATTCAATTTTATATTCAGAATAAGTTTCTCTATCTAGAGGACCGTTAGTAACTAGCGCGTAATGATTGGAAACTGTAGGGCTCAATCTAAACGGTGTCCCAGGAGCCAACGCAAGTTTCACTTTCCCGTTCTCTCCTAAATCTGCATCTTTTGTACTAATTAATGAAACGACTGTGCCATTTGAGGAGTTCTCAGGAATTGGACTTGAGAGAGAAGTTATGATTATGTCAGGTGCGTTGTCATTTACATCATTAACCTTAATCTTTACACTGCAGTGACCCTCCATTTGAGGATTCCCTTTGTCCTTTGCAACTATATCAAATTTATGTAAGCTTGCTTTTTCATGGTCCAGTTGTCCTCTAACTGTTATGACACCAGTTTGTTGGTTAATATTAAACAATGCTGTATCTAGTGTTTGGTCTGCAAAAAAATATTCAATCTCTCCATTTAACCCTTCATCTAAATCTATAGCCTTGACTTTTAAAATTTCTTTATGGCTTGATTCGTTTTCATCAACAACAGTCTCATAGAAAGGCTTTTCAAATTCGGGAGCATTGTCATTGTTATCCAAAACTACAACAGTGATCTCGCATGTGCCCGTGCGCACTGGATTCCCTCCGTCAGCTGCCGTTAATATTAGCTTATGGACAGCCTGTTTTTCTCGGTCAAGAGGTTGCTTGAGTACTAGTTCTGGGATTTTGACAGCATCTTGAGTTTTTACGTTTAAAACGAAATTATCATTTATGCTCAGACTGTATGATTTTAAAGAATTTGACTGTACATCTGAGTCAATAGCGCTCTCTAAAAGGAATTTTGCTCCTGAATTAATAGATTCTGGAATGTTCAATATACGCTCATTAGATTTAAAATTCGGCGTGTTGTCATTAATATCTTGTACTTCAATCTCAACTCGATGCATCTGCAGAGGATTTTCTAAAACGGCTTGAAGAGGCAAAACACACGGGACATTGTATCCACATAAACCCTCTCTATCAATTCTCTCATTCACAATAAGATCACCCTTTTCCACATTCACAGCGAAATACTGCTTACCAGTCTCAGATGCTATTTGTAGTTTACGATCTATAATCTTAGACCCGTCCAAACCTAGATCTTTAGCGATATTTCCAACCACAGATCCTTCTCTTAGCTCTTCTGGAATTGTGTATCGAATCTGCGCCTCTATTGTACTCCAAGGAAGAATAAAGACACAGCACCACCAAATTCTCCTCAAAAAGAAAAGAGATTCCATCATCTCCGGCTCCAAGCTTTTGACGATTTATCCAAGTTTTCTTAAGGTTTCAAAATATTCACAACAGTTACATAATCCCAAACAATATATTGATGGCATATTCCTATTTAGTGTAAGAGGTCCTTTTGATAAAAACGAGTAATTCATGCGTTCTCTGTGCTCAAGCTCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU486965 True 6166 lncRNA 0.41 2 9471070 9497593

Neighbor

gene id symbol gene type direction distance location
CI01000304_09342385_09345935 NA coding downstream 125135 9341854 ~ 9345935 (-)
CI01000304_09284328_09286980 AVD coding downstream 184038 9284189 ~ 9287032 (-)
CI01000304_09046090_09129612 PCDH1 coding downstream 341458 9046090 ~ 9129612 (-)
CI01000304_08913076_08936241 KCNIP3B, KCNIP3 coding downstream 534829 8912702 ~ 8936241 (-)
CI01000304_08904762_08909795 NA coding downstream 560580 8904478 ~ 8910490 (-)
CI01000304_09508090_09519201 NA coding upstream 9704 9507297 ~ 9519333 (-)
CI01000304_09566730_09575706 NA coding upstream 69137 9566730 ~ 9575706 (-)
CI01000304_09577749_09578512 NA coding upstream 78526 9576119 ~ 9578512 (-)
CI01000304_09609674_09619712 NA coding upstream 111917 9609510 ~ 9620030 (-)
CI01000304_09622805_09640521 NA coding upstream 124783 9622376 ~ 9640540 (-)
G424055 NA non-coding downstream 4748 9452142 ~ 9466322 (-)
G424106 NA non-coding downstream 11319 9360776 ~ 9459751 (-)
G424071 NA non-coding downstream 20645 9443332 ~ 9450425 (-)
G424072 NA non-coding downstream 21239 9442404 ~ 9449831 (-)
G424123 NA non-coding downstream 52883 9415420 ~ 9418187 (-)
G424052 NA non-coding upstream 1414 9499007 ~ 9503311 (-)
G424158 NA non-coding upstream 22550 9520143 ~ 9520401 (-)
G424162 NA non-coding upstream 32090 9529683 ~ 9531324 (-)
G424181 NA non-coding upstream 65129 9562722 ~ 9563089 (-)
G424187 NA non-coding upstream 147904 9645497 ~ 9645723 (-)
G423386 NA other downstream 605774 8862223 ~ 8865296 (-)
G422810 NA other downstream 1818367 7630159 ~ 7652703 (-)
G422378 NA other downstream 2688024 6744679 ~ 6783046 (-)
G422354 NA other downstream 2839571 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 2987575 6480743 ~ 6483986 (-)
CI01000304_09737662_09738777 NA other upstream 239153 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 655853 10160458 ~ 10163762 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 692981 10190574 ~ 10192357 (-)
G424808 NA other upstream 946762 10444355 ~ 10542665 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G100446 NA non-coding NC_048565.1 CM023219.2 91102675 ~ 91102960 (-)
tiger barb (Puntius tetrazona) G75481 pcdh1gc5,LOC107677983,LOC107552066,LOC107720701 non-coding NC_056708.1 CM032077.1 7317305 ~ 7340192 (-)
mexican tetra (Astyanax mexicanus) G174917 LOC108276785 non-coding NC_035916.1 CM008319.1 10992699 ~ 11079468 (-)