Gene
RNA
| Item | Value |
|---|---|
| gene id | G424162 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 9529683 ~ 9531324 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU487071 | True | 1045 | lncRNA | 0.38 | 5 | 9529683 | 9531324 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_09508090_09519201 | NA | coding | downstream | 10350 | 9507297 ~ 9519333 (-) |
| CI01000304_09342385_09345935 | NA | coding | downstream | 183748 | 9341854 ~ 9345935 (-) |
| CI01000304_09284328_09286980 | AVD | coding | downstream | 242651 | 9284189 ~ 9287032 (-) |
| CI01000304_09046090_09129612 | PCDH1 | coding | downstream | 400071 | 9046090 ~ 9129612 (-) |
| CI01000304_08913076_08936241 | KCNIP3B, KCNIP3 | coding | downstream | 593442 | 8912702 ~ 8936241 (-) |
| CI01000304_09566730_09575706 | NA | coding | upstream | 35406 | 9566730 ~ 9575706 (-) |
| CI01000304_09577749_09578512 | NA | coding | upstream | 44795 | 9576119 ~ 9578512 (-) |
| CI01000304_09609674_09619712 | NA | coding | upstream | 78186 | 9609510 ~ 9620030 (-) |
| CI01000304_09622805_09640521 | NA | coding | upstream | 91052 | 9622376 ~ 9640540 (-) |
| CI01000304_09699524_09703985 | TLX3B | coding | upstream | 168044 | 9699368 ~ 9706659 (-) |
| G424158 | NA | non-coding | downstream | 9282 | 9520143 ~ 9520401 (-) |
| G424066 | NA | non-coding | downstream | 24922 | 9441337 ~ 9504761 (-) |
| G424052 | NA | non-coding | downstream | 26372 | 9499007 ~ 9503311 (-) |
| G424065 | NA | non-coding | downstream | 32090 | 9471070 ~ 9497593 (-) |
| G424060 | NA | non-coding | downstream | 54634 | 9461133 ~ 9475049 (-) |
| G424181 | NA | non-coding | upstream | 31398 | 9562722 ~ 9563089 (-) |
| G424187 | NA | non-coding | upstream | 114173 | 9645497 ~ 9645723 (-) |
| G424188 | NA | non-coding | upstream | 114490 | 9645814 ~ 9646065 (-) |
| G424190 | NA | non-coding | upstream | 118337 | 9649661 ~ 9649877 (-) |
| G424170 | NA | non-coding | upstream | 127006 | 9658330 ~ 9659287 (-) |
| G423386 | NA | other | downstream | 664387 | 8862223 ~ 8865296 (-) |
| G422810 | NA | other | downstream | 1876980 | 7630159 ~ 7652703 (-) |
| G422378 | NA | other | downstream | 2746637 | 6744679 ~ 6783046 (-) |
| G422354 | NA | other | downstream | 2898184 | 6631086 ~ 6631499 (-) |
| CI01000304_06480836_06483554 | SUB1L2, SUB1A, SUB1 | other | downstream | 3046188 | 6480743 ~ 6483986 (-) |
| CI01000304_09737662_09738777 | NA | other | upstream | 205422 | 9736746 ~ 9738777 (-) |
| CI01000304_10160458_10161768 | VAMP2 | other | upstream | 622122 | 10160458 ~ 10163762 (-) |
| CI01000304_10191594_10192287 | RNASEKB, RNASEK | other | upstream | 659250 | 10190574 ~ 10192357 (-) |
| G424808 | NA | other | upstream | 913031 | 10444355 ~ 10542665 (-) |
