G424181


Basic Information

Item Value
gene id G424181
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9562722 ~ 9563089 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU487105
CGGGTGTGAAACGACATGAAGGTAAGTAATTAATGGCAGAATTTTCATTTTTTGGGTGAACTAACACTTTAAGCCTAGTCCCAGACTAAAATGCATGTTTGAGCTGTTTCAACTGAAAGCAACTTGCACTGACGTATCTTAAAATATGTCAGTGCCATTGTTTTGTCTCAAAATGCATACCAGTAATGTTTTTTAATGTTTTTTTTTTTTTTTTTTTTTTTTTTCAAATGCACGTTTATAAAATCTGCTTTAATGTCCTAATTGAGCTAAGGCCTAATCCTGGCTTAATCTAAGCCCTGTGTGTGAAAGCCAGGCCTTCATCAGTTTATTGAAACCTGGGCTCATTGGAAAAATATGTCTCTATCAAG

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU487105 True 368 lncRNA 0.35 1 9562722 9563089

Neighbor

gene id symbol gene type direction distance location
CI01000304_09508090_09519201 NA coding downstream 43389 9507297 ~ 9519333 (-)
CI01000304_09342385_09345935 NA coding downstream 216787 9341854 ~ 9345935 (-)
CI01000304_09284328_09286980 AVD coding downstream 275690 9284189 ~ 9287032 (-)
CI01000304_09046090_09129612 PCDH1 coding downstream 433110 9046090 ~ 9129612 (-)
CI01000304_08913076_08936241 KCNIP3B, KCNIP3 coding downstream 626481 8912702 ~ 8936241 (-)
CI01000304_09566730_09575706 NA coding upstream 3641 9566730 ~ 9575706 (-)
CI01000304_09577749_09578512 NA coding upstream 13030 9576119 ~ 9578512 (-)
CI01000304_09609674_09619712 NA coding upstream 46421 9609510 ~ 9620030 (-)
CI01000304_09622805_09640521 NA coding upstream 59287 9622376 ~ 9640540 (-)
CI01000304_09699524_09703985 TLX3B coding upstream 136279 9699368 ~ 9706659 (-)
G424162 NA non-coding downstream 31398 9529683 ~ 9531324 (-)
G424158 NA non-coding downstream 42321 9520143 ~ 9520401 (-)
G424052 NA non-coding downstream 59411 9499007 ~ 9503311 (-)
G424065 NA non-coding downstream 65129 9471070 ~ 9497593 (-)
G424060 NA non-coding downstream 87673 9461133 ~ 9475049 (-)
G424187 NA non-coding upstream 82408 9645497 ~ 9645723 (-)
G424188 NA non-coding upstream 82725 9645814 ~ 9646065 (-)
G424190 NA non-coding upstream 86572 9649661 ~ 9649877 (-)
G424170 NA non-coding upstream 95241 9658330 ~ 9659287 (-)
G424196 NA non-coding upstream 96494 9659583 ~ 9660325 (-)
G423386 NA other downstream 697426 8862223 ~ 8865296 (-)
G422810 NA other downstream 1910019 7630159 ~ 7652703 (-)
G422378 NA other downstream 2779676 6744679 ~ 6783046 (-)
G422354 NA other downstream 2931223 6631086 ~ 6631499 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other downstream 3079227 6480743 ~ 6483986 (-)
CI01000304_09737662_09738777 NA other upstream 173657 9736746 ~ 9738777 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 590357 10160458 ~ 10163762 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 627485 10190574 ~ 10192357 (-)
G424808 NA other upstream 881266 10444355 ~ 10542665 (-)

Expression


Co-expression Network