G424169


Basic Information

Item Value
gene id G424169
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9694525 ~ 9695379 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU487078
CCGACTCTGTGTCAGCATCACACGCATCGTGGTGCTCACGTGAACAGCGTCAGCCAATACTGAGCCGGCGTTTGGACGTAAACACGGAAGAGCTGCACTGTGTCAACTGTGTAGAAGACTGACAGGGTAGAGGGGAGAAAAAATAAAAAATGTTGAATGAAGTTATTTTTATTTGTTTTTGCACACAAAACGTATTCTCATCACTTCATAACATTAAGGTTGAACCTCTGTAGTCACATTGACTATTTTAACGATGTCTTTGCTACTTCTCTGGACCTTGAATGTGGTAATTTTGTTCTATGAGACACCTCTCAGATTTCATCAAAATATATATCTTTTATTTGTGTTCTGAAGATGAACGAAGGTCTTGCGGGTTTGGAACGACATGAGGGTGAGTAATAAATGACAATTTTCATTTTTGGGTGAACTAACCCTTTAAGGTGCCTGAACTCATCTCACCTTTACAGGTGACTCTTCTTCACTTTCTTCCTCTTCATCGTCATCATCCTCATCATCATCCTCTTCATCACTGGAAGGTAAAATGGAAATATAATTTTATTTAAAAATAGCTGCTATTTCTATAACACTAAAGATGGCAAAGACCACACTTACTCAATTTCATCGTCGTCATCATCATCGTCATCATCATCCTCCTCCTCCTCCTCTTGTTCATCCAACTTCATTTTTTTGAAGGCTTAGCAGTCAGTGATGCTGGTCTCTTCTTAGCTGTCGTCACGGTCTCTTCTTCTTCTTCCTCCTCCTCCTCTTCATCAAAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU487078 True 777 lncRNA 0.40 2 9694525 9695379

Neighbor

gene id symbol gene type direction distance location
CI01000304_09622805_09640521 NA coding downstream 53985 9622376 ~ 9640540 (-)
CI01000304_09609674_09619712 NA coding downstream 74495 9609510 ~ 9620030 (-)
CI01000304_09577749_09578512 NA coding downstream 116013 9576119 ~ 9578512 (-)
CI01000304_09566730_09575706 NA coding downstream 118819 9566730 ~ 9575706 (-)
CI01000304_09508090_09519201 NA coding downstream 175192 9507297 ~ 9519333 (-)
CI01000304_09699524_09703985 TLX3B coding upstream 3989 9699368 ~ 9706659 (-)
CI01000304_09720695_09725068 UGT5G2 coding upstream 24897 9720276 ~ 9725068 (-)
CI01000304_09726631_09727403 NA coding upstream 30568 9725947 ~ 9730308 (-)
CI01000304_09737662_09738777 NA coding upstream 41847 9736746 ~ 9738777 (-)
CI01000304_09751291_09754997 CLDN7B, CLDX, CLDN7 coding upstream 55542 9750921 ~ 9755245 (-)
G424203 NA non-coding downstream 3285 9676129 ~ 9691240 (-)
G424202 NA non-coding downstream 19438 9674873 ~ 9675087 (-)
G424201 NA non-coding downstream 22478 9671744 ~ 9672047 (-)
G424200 NA non-coding downstream 22792 9671187 ~ 9671733 (-)
G424199 NA non-coding downstream 25548 9668750 ~ 9668977 (-)
G424159 NA non-coding upstream 354 9695733 ~ 9697323 (-)
G424217 NA non-coding upstream 48189 9743568 ~ 9744018 (-)
G424218 NA non-coding upstream 48826 9744205 ~ 9744618 (-)
G424239 NA non-coding upstream 144728 9840107 ~ 9840527 (-)
G424418 NA non-coding upstream 281880 9977259 ~ 9977486 (-)
G423386 NA other downstream 829229 8862223 ~ 8865296 (-)
G422810 NA other downstream 2041822 7630159 ~ 7652703 (-)
G422378 NA other downstream 2911479 6744679 ~ 6783046 (-)
G422354 NA other downstream 3063026 6631086 ~ 6631499 (-)
CI01000304_10160458_10161768 VAMP2 other upstream 458067 10160458 ~ 10163762 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 495195 10190574 ~ 10192357 (-)
G424808 NA other upstream 748976 10444355 ~ 10542665 (-)
CI01000304_11338304_11348212 ILK other upstream 1651641 11338019 ~ 11348212 (-)

Expression


Co-expression Network