G424448


Basic Information

Item Value
gene id G424448
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10033594 ~ 10036068 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU487416
GTGTCATTCATGTTTGGTTGAGCTTCTGTGTATGTTCGCTGATCAATAGTCAAAGTTCAAGTTGTGAAGGCAGTCTATGGAGGGACAGAACACTGTCAGATTTCATCAAAAAGATCTTCATGTGTTCCGAAGATGAACAAAAGTCTTATGGGTTTGGAACGACATGAGGATGGCCCCGATGAACGCACGCACACTTACACACGCACACAGGTTTCCATGTTTTATGGGGACTTCCCAATGACGTAATGATTTTTTTAATACTGTACAAATTGTATATTCTATCCCCCTACAACCCTACCCCTAAACTTACCCATCACAGAAAACTTTCTGCATTTTTAGCTTTTCAAGACACTTAATTAAGTATGATTTAGAAGCTGTTTTCCTCATGGGGACCAAGAAAAAAAAAGTCCTCATAAGGTCAAAATTTACTGGTATTACTATCCTTGTGGGGACATTTGGTCCCCATAACATAGGGAATACCAGGTACACACTTACACATACACACTCACACACACAGAGAGAAAGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU487416 True 527 lncRNA 0.40 3 10033594 10036068

Neighbor

gene id symbol gene type direction distance location
CI01000304_09955649_09957311 NA coding downstream 74287 9955554 ~ 9959307 (-)
CI01000304_09949821_09951564 NA coding downstream 80337 9949165 ~ 9953257 (-)
CI01000304_09944778_09945833 NA coding downstream 87761 9944623 ~ 9945833 (-)
CI01000304_09765626_09814386 FGF11B, FGF11, FGF11A coding downstream 219208 9765626 ~ 9814386 (-)
CI01000304_09751291_09754997 CLDN7B, CLDX, CLDN7 coding downstream 278349 9750921 ~ 9755245 (-)
CI01000304_10119297_10119833 NA coding upstream 82822 10118890 ~ 10119833 (-)
CI01000304_10123588_10128249 PCOLCE, PCOLCEA coding upstream 87339 10123407 ~ 10128249 (-)
CI01000304_10137324_10147067 PER1A coding upstream 100972 10137040 ~ 10149531 (-)
CI01000304_10160458_10161768 VAMP2 coding upstream 124390 10160458 ~ 10163762 (-)
CI01000304_10167646_10169639 NA coding upstream 130119 10166187 ~ 10169639 (-)
G424418 NA non-coding downstream 56108 9977259 ~ 9977486 (-)
G424239 NA non-coding downstream 193067 9840107 ~ 9840527 (-)
G424218 NA non-coding downstream 288976 9744205 ~ 9744618 (-)
G424217 NA non-coding downstream 289576 9743568 ~ 9744018 (-)
G424159 NA non-coding downstream 336271 9695733 ~ 9697323 (-)
G424482 NA non-coding upstream 26197 10062265 ~ 10062752 (-)
G424474 NA non-coding upstream 46330 10082398 ~ 10090227 (-)
G424496 NA non-coding upstream 123580 10159648 ~ 10160361 (-)
G424504 NA non-coding upstream 137531 10173599 ~ 10174147 (-)
G424535 NA non-coding upstream 216153 10252221 ~ 10252462 (-)
CI01000304_09737662_09738777 NA other downstream 294123 9736746 ~ 9738777 (-)
CI01000304_09566730_09575706 NA other downstream 464560 9566730 ~ 9575706 (-)
G423386 NA other downstream 1168298 8862223 ~ 8865296 (-)
G422810 NA other downstream 2380891 7630159 ~ 7652703 (-)
G422378 NA other downstream 3250548 6744679 ~ 6783046 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other upstream 154506 10190574 ~ 10192357 (-)
G424808 NA other upstream 408287 10444355 ~ 10542665 (-)
CI01000304_11338304_11348212 ILK other upstream 1310952 11338019 ~ 11348212 (-)
G425580 NA other upstream 1832609 11868677 ~ 11872906 (-)

Expression


Co-expression Network