G424323


Basic Information

Item Value
gene id G424323
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10062434 ~ 10062747 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU487279
ACTGAAATATCACATGGTCCTAAGTATTCAGACCCTTTGCTGTGACACTCATATATTTAACTCAGGTGCTGTCCATTTCTTCTGATCATCCTTGAGATGGTTCTTCACCTTCATTTGAGTCCAGCTGTGTTTGATTATACTGATTGGACTTGATTAGGAAAGCCACACACCTGTCTATATAAGACCTTACAGCTCACAGTGCATGTCAGAGCAAATGAGAATCATGAGGTCAAAGGAACTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAAAAAATTCTGCTGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU487279 True 314 lncRNA 0.42 1 10062434 10062747

Neighbor

gene id symbol gene type direction distance location
CI01000304_09976509_10020020 EFNB3A coding upstream 41859 9976509 ~ 10020575 (+)
CI01000304_09961620_09975855 GIGYF1 coding upstream 86564 9961620 ~ 9975870 (+)
CI01000304_09879900_09938234 NLGN2, NLGN2A, NLGN2B coding upstream 123113 9879854 ~ 9939321 (+)
CI01000304_09757695_09760278 NA coding upstream 301735 9757093 ~ 9760699 (+)
CI01000304_09695997_09696577 NA coding upstream 365291 9695997 ~ 9697143 (+)
CI01000304_10093597_10099497 KDM6BA, KDM6BB, KDM6B coding downstream 30850 10093597 ~ 10099497 (+)
CI01000304_10112119_10114490 TMEM88A coding downstream 47231 10109978 ~ 10114826 (+)
CI01000304_10172353_10175399 AP4M1 coding downstream 109606 10172353 ~ 10175694 (+)
CI01000304_10177319_10186557 ARRB2.L, ARRB2A, ARRB2, ARRB2B coding downstream 114572 10177319 ~ 10186665 (+)
CI01000304_10189588_10190707 MED11 coding downstream 126841 10189588 ~ 10191798 (+)
G423892 NA non-coding upstream 348147 9714061 ~ 9714287 (+)
G423878 NA non-coding upstream 400879 9661163 ~ 9661555 (+)
G423877 NA non-coding upstream 401590 9660434 ~ 9660844 (+)
G423876 NA non-coding upstream 402276 9659708 ~ 9660158 (+)
G423842 NA non-coding upstream 403162 9658246 ~ 9659272 (+)
G424326 NA non-coding downstream 3348 10066095 ~ 10066360 (+)
G424277 NA non-coding downstream 52587 10115334 ~ 10115681 (+)
G424246 NA non-coding downstream 53596 10116343 ~ 10127322 (+)
G424257 NA non-coding downstream 72745 10135492 ~ 10137641 (+)
G424334 NA non-coding downstream 85707 10148454 ~ 10149998 (+)
CI01000304_09564068_09565679 HRH2B other upstream 496861 9561005 ~ 9565778 (+)
G423614 NA other upstream 1113012 8949036 ~ 8949422 (+)
CI01000304_08671901_08672203 NA other upstream 1389879 8671770 ~ 8672555 (+)
CI01000304_08232073_08235598 NA other upstream 1827474 8231293 ~ 8235655 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other upstream 2081699 7979078 ~ 7980735 (+)
G424251 NA other downstream 126075 10188822 ~ 10189404 (+)
CI01000304_10555326_10571933 NA other downstream 492539 10555216 ~ 10572164 (+)
G425718 NA other downstream 2365958 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 3493704 13578049 ~ 13595097 (+)

Expression


Co-expression Network