G424334


Basic Information

Item Value
gene id G424334
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10148454 ~ 10149998 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU487290
GATAAAGTCTTCAAGTTCACACATTGTTTTATGTGTAGCTTAAAAACACTAGGGTCTGGTTTCACAAACGGGGTTTAAGACAGAATTAGACCTTAGTTCAATTTGGACAGTTCAAGTTGCTTTTATAAACGTGCCTTAGAAAAAACATTACTGGTGTGCATCTAGAGACAAAACAATGACACTGACATATTTTAAGATATGTCTGTACAAGTTGCTTTCAGTTAAAACAACTCATCATGCATTTCTGGGACTAGGCTTAAGCCTGTGAAACTAGTGGTAAATGTGCGGGAAGATGCATGTGTCTGAGTTGTTTACAGCTATTCAACATGAAACTAGGGTTTCCCCTCCTTATGTATTGTTTTTTTCTGTTCTCATCTGTTTTCCTTACCCTGGCAAGTTTTAGTTTTCAGTGCATTTTGCACTTCTGTGCATCATGCATTATTAAGTAATCTTTTTAGAATGACACTATAAAAACAACTATATTATATGGTGGAGATATTGGAAATACAATATTTAAAGATATCATAGTTATATTTTCGAGACTCAGTTTCCTCAGCTTTCCTTAACAAATTTAAATATATGCACTTAGTTGAATGGGTAACACTTTACAATAAGGTTCATTAGTTAAACCCTATTGTAAAGTGTAACCAACGAATGTGAGCCCTCTATCTGTAGATCTGTGGAATTACTGATATAAACAATGACTTTAAATGAGAAATATTTTGATACAGCCAAACACATTAAAACCATGCAAACTACATCTTTGAAACAGACAATCAAGTTATTAAAATGTACTGGAATATAACGAAGTCAAATGATAAATCAACTGGCCTTATATACAATGTTCACCCCAAGAGCACATCCCAAAATCACCTAAAAATGTTTACAAATGATCAGAGATCCGCAATGGCATCAGGAAATGCCAATAATATAGACATAATACATGTTGAAAAGTTAAACGCTTTTCTTTATCAAATACAGATTAAACTGTCACATCCGAGGCACGACTATCAACACAATAAACAAAATATTATGATAACACACAGCTTTTCTTACCTTATGAAATTATGTGTTTATTTGTTATTGAAGTTTAAGCAGCTTTTCAGAGCTTGTATCCGAATAGACGCCTGTGCAACATAGTAGTTTAGTACAGTAACTCACGCCTTGTCAGATTTCAACCCGTGTGGGGACACCACCATCATTCTTGCTTTGGAACAAATTTCACGTGTAACCAGCAACTCTCTAAACTATCTCTCATTGGCTCCTAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU487290 True 1270 lncRNA 0.34 2 10148454 10149998

Neighbor

gene id symbol gene type direction distance location
CI01000304_10112119_10114490 TMEM88A coding upstream 33628 10109978 ~ 10114826 (+)
CI01000304_10093597_10099497 KDM6BA, KDM6BB, KDM6B coding upstream 48957 10093597 ~ 10099497 (+)
CI01000304_09976509_10020020 EFNB3A coding upstream 127879 9976509 ~ 10020575 (+)
CI01000304_09961620_09975855 GIGYF1 coding upstream 172584 9961620 ~ 9975870 (+)
CI01000304_09879900_09938234 NLGN2, NLGN2A, NLGN2B coding upstream 209133 9879854 ~ 9939321 (+)
CI01000304_10172353_10175399 AP4M1 coding downstream 22355 10172353 ~ 10175694 (+)
CI01000304_10177319_10186557 ARRB2.L, ARRB2A, ARRB2, ARRB2B coding downstream 27321 10177319 ~ 10186665 (+)
CI01000304_10189588_10190707 MED11 coding downstream 39590 10189588 ~ 10191798 (+)
CI01000304_10192819_10195110 CLG07H17ORF49, CSSA04H17ORF49 coding downstream 42758 10190564 ~ 10195110 (+)
CI01000304_10256417_10260924 NA coding downstream 106225 10256223 ~ 10260924 (+)
G424257 NA non-coding upstream 10813 10135492 ~ 10137641 (+)
G424246 NA non-coding upstream 27010 10116343 ~ 10127322 (+)
G424277 NA non-coding upstream 32773 10115334 ~ 10115681 (+)
G424326 NA non-coding upstream 82094 10066095 ~ 10066360 (+)
G424323 NA non-coding upstream 85707 10062434 ~ 10062747 (+)
G424336 NA non-coding downstream 2229 10152227 ~ 10152541 (+)
G424337 NA non-coding downstream 3186 10153184 ~ 10153404 (+)
G424248 NA non-coding downstream 3446 10153444 ~ 10216855 (+)
G424351 NA non-coding downstream 69122 10219120 ~ 10221115 (+)
G424366 NA non-coding downstream 92981 10242979 ~ 10243213 (+)
CI01000304_09564068_09565679 HRH2B other upstream 582881 9561005 ~ 9565778 (+)
G423614 NA other upstream 1199032 8949036 ~ 8949422 (+)
CI01000304_08671901_08672203 NA other upstream 1475899 8671770 ~ 8672555 (+)
CI01000304_08232073_08235598 NA other upstream 1913494 8231293 ~ 8235655 (+)
G424251 NA other downstream 38824 10188822 ~ 10189404 (+)
CI01000304_10555326_10571933 NA other downstream 405288 10555216 ~ 10572164 (+)
G425718 NA other downstream 2278707 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 3406453 13578049 ~ 13595097 (+)
G426312 NA other downstream 4180050 14330048 ~ 14330886 (+)

Expression


Co-expression Network