G424251


Basic Information

Item Value
gene id G424251
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10188822 ~ 10189404 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU487194
TCACGCATTGCGTTACCTGCCTTGCCAGAGTTTGATGTGAAAGTCCAGCATCTCCTCCAGCCTGGACACTGTCAGAGCATCCAGTCATTACCGAAGCACAGCAGTACTTATAGCCTGTTTATGTACATTTGACAGCATCTGTGTTAAACTCACCCTTGTCAAAGAGGCCAGAGAAAGGGTCTCTCTGCCTGCAGTCTCTGTGAAACAGCTCCGCTCGCACGTGACTCTTCCAAGACTCCATGATCTGCAGCTTTGGAGCTCAGATGGACAATTCACCTATTTCACACTTTTGAAGCTCGTCTAATGTATTTTTACAGCGTTTTTCACATTGAGTATCACGGGCAGGTCTATACAACCAATTTCCGTGGCAGATTTTCTCCAGATGTTGCGCAAATCGCTTTAAATACTAGTTAAACGTGATCCATGTTTAGTTTTCTCTACACGGTACTCGGCAGATTTCGCGTTTTTATCATTTTGTTCTTCTGCGGCTTCCGTACTTCGCAACATACTGAAAGCGCTTTGTGTGCTACATTTAGTGGTTAAATATCTTGTCAACTTTAGCTTTCGGTGCTTCAATATACATGTTGTGTGGTCGGAATGGCTAATGATAGGCTGAGAGCATTAGAAGATGTGGAGAAGGAGATTGCTTTAGTGCTGCAGAGCGCAGGAAATATCGTGCTGGAGCTTTCTAAAGAGAAGGCCAATGCCAGTTTATTAGATCGACAGCTGAATCAGTTCCAGACCTCCATCAACAGAGTTGAGAATGAACTGAGTTCACAGATCCGATATCTGACACAGGTGGCAACAGGTCAGCCTCATGAGGGATCAACATACTCAGCCAGAAAGGACTGTCAGATGGCTTTAAACCGTGCAGAATATGCCCGTGTCAAACTGGGAGAGCTGGGACGTACCTGTGAGATGATGCTTGATCCACAGACGTAAAGACTTATTAAATGGACTATTTCTTTGTAATATCTGCTAGCCGACTTCACAAGTGTCTACATGTTTCAAGACCTGTCTGAATACCATCCACAAACAACACTTTTTATTCTCCATAGTCTAAGGAAATCTTGTATGACAAACCTAGTGATTTGCTTTGAATATCTTCCCTGTGCTGTAATAGCACCAACGATTTTGTCTTGTTGAGAAAATGTTACATAGTTTCTGTTAATGTTTTTTTTAAATAGTTGTGACAAAAACAAAACAACAACAATAAAAAAAAATTTTTTCATTAGTATTTTATTGAAGGGAACATAAGACTTATCTTGCATTGTTCATTACTGTTGTGATATCAAGTACACAGCACAAGGTTTGCAGGGTGTACATCAATAAAATAATAGACATTTATATTACCACACAAACATTTAAATATTGGAATTCAAAAAATGTCCACCATACACACACATTCAACATAAACACCAGCTACTAACATCTGGATCCATAGTGTTTTATGGTGTCTTATAGCTTATTCATCAGAAGACAACCATCAAAGTGAAGACCTTCGGCTTGTTTTGCTTATTTATATGATGGAAAATGTGGAGTCAAAGTTCCTTCCCATAATGTTCTGAATATTTCTGGAATTTAACAACACATGACATGCATATATATGCACACAGCATGTATTTGTGCCTGTTTATTGTATGTTTTGGACACTTTTTCTTCATAACATTATATATCTAGTATTTAAATTTTGAGCCAAAGATTAACTGGCAAATATATCAATTTCAGACAATATAACAAAGCAAAATCTTCTTCTAGATTGTTGAGAAGTCTTTTAAAAAATAAATAATTAGGAATAATTGGAGTTGAATTTGGAAATGGTCTGGGTTTATGTGACCATGTACTCCTGGCGCTTGTTAAGGCGAACTTGACACAGAGACACTGCGCCAACACCTACGTAGATGGCAGCAGCAATGAAGCAGTTGATCCCAACTTGGTTGTAGAGTCCGTAAATTGTCTGTGGTGGATTCTTGCTGTTGAAGAGAAGACAAATTCAGCAGTAAACATTTGCATTTAAAAATGTCATATCATCT
>TU487195
GTACTTCGCAACATACTGAAAGCGCTTTGTGTGCTACATTTAGTGGTTAAATATCTTGTCAACTTTAGCTTTCGGTGCTTCAATATACATGTTGTGTGGTCGGAATGGCTAATGATAGGCTGAGAGCATTAGAAGATGTGGAGAAGGAGATTGCTTTAGTGCTGCAGAGCGCAGGAAATATCGTGCTGGAGCTTTCTAAAGAGAAGGCCAATGCCAGTTTATTAGATCGACAGCTGAATCAGTTCCAGACCTCCATCAACAGAGTTGAGAATGAACTGAGTTCACAGATCCGATATCTGACACAGGTGGCAACAGGTCAGCCTCATGAGGGATCAACATACTCAGCCAGAAAGGACTGTCAGATGGCTTTAAACCGTGCAGAATATGCCCGTGTCAAACTGGGAGAGCTGGGACGTACCTGTGAGATGATGCTTGATCCACAGACGTAAAGACTTATTAAATGGACTATTTCTTTGTAATATCTGCTAGCCGACTTCACAAGTGTCTACATGTTTCAAGACCTGTCTGAATACCATCCACAAACAACACTTTTTATTCTCCATAGTCTAAGGAAATCTTGTATGACAAACCTAGTGATTTGCTTTGAATATCTTCCCTGTGCTGTAATAGCACCAACGATTTTGTCTTGTTGAGAAAATGTTACATAGTTTCTGTTAATGTTTTTTTTAAATAGTTGTGACAAAAACAAAACAACAACAATAAAAAAAAATTTTTTCATTAGTATTTTATTGAAGGGAACATAAGACTTATCTTGCATTGTTCATTACTGTTGTGATATCAAGTACACAGCACAAGGTTTGCAGGGTGTACATCAATAAAATAATAGACATTTATATTACCACACAAACATTTAAATATTGGAATTCAAAAAATGTCCACCATACACACACATTCAACATAAACACCAGCTACTAACATCTGGATCCATAGTGTTTTATGGTGTCTTATAGCTTATTCATCAGAAGACAACCATCAAAGTGAAGACCTTCGGCTTGTTTTGCTTATTTATATGATGGAAAATGTGGAGTCAAAGTTCCTTCCCATAATGTTCTGAATATTTCTGGAATTTAACAACACATGACATGCATATATATGCACACAGCATGTATTTGTGCCTGTTTATTGTATGTTTTGGACACTTTTTCTTCATAACATTATATATCTAGTATTTAAATTTTGAGCCAAAGATTAACTGGCAAATATATCAATTTCAGACAATATAACAAAGCAAAATCTTCTTCTAGATTGTTGAGAAGTCTTTTAAAAAATAAATAATTAGGAATAATTGGAGTTGAATTTGGAAATGGTCTGGGTTTATGTGACCATGTACTCCTGGCGCTTGTTAAGGCGAACTTGACACAGAGACACTGCGCCAACACCTACGTAGATGGCAGCAGCAATGAAGCAGTTGATCCCAACTTGGTTGTAGAGTCCGTAAATTGTCTGTGGTGGATTCTTGCTGTTGAAGAGAAGACAAATTCAGCAGTAAACATTTGCATTTAAAAATGTCATATCATCTCAGGATCTGCCAGTTCTCATTCTACACAGGCAGCCTATTCGAAATGTTTGAAGCAAATTATTATTTGAGCAAAAATACAGAAAAAAAAATGTAATTTGATCCTTCAGAGAAATCATTCTAATATGATGATTTGCTGCTCAAGAAACATTTCTTATTATTATCAGTGATGAAAACAGTTCTGCTGCTTAAAATTTTTGTGGAAACCGCAATTAATTTTTTTATTTAGGATTCTTTGATGAATAGAAAGTTCAAAAGAACAGCATTTATTTGAAGTAGAAATCTTGCAACATTATAAATGTCTGTCACTTTTGATCAACTTAATGCATCCTTGTTGAATAAAAGTATTAATTTCTTATCTTAAAATATCTATTCAGATCTCTGGATCATTATATGGGGGAGAGGAACTCACTCATCACGGATGTCTTCCTCAGTAAAGGGAACATCTTCGATCAGCACAGCAGATTTTGCACTGAAGAAGATTCCCAACATTGACTGAAAACAAGAGTGAATAATTAATAACAAGGTTTGTTATGAATATTTAAAATTAGGACATATAGGTGGAATTAATTATGGAAGAGCACCCAATATATATCTATGGAAATACACAAAAAAGATGAATAGCTATTAAGGCCTTCACATCCTATGATCCCAACACCTGCTGTTATATTCCTCATATCTGGCTCCTAGTATATTCTGCTGATAAATAGGTGACTAAACATATCTTTTTGTGCAGATTTATTACAAATGTACGCATTTATCTATCAGTGAAGATCCAAATACACCAACATTTACTATTATTACGTATATAGGTAAATTATTCCTGTCGTTGGGGCTTGGGGGTGAATCCCATTAGCTACAACTAGCAAGCGATGACACGAAGAAGACTATAATCCTTACCAGCATAACGACACCCCAGATGCTTAACACGATCCCACAGGCTGCCAATTTGGGCCCACAGAATAAAAGCGACGGCATTTTATCCGAGATCGCCCACAGATTCTTCCTCTCAAAACTGGAAAAATGATGCTACATCCAATCGGGATGATAGCCTGCCTCTATCCTTCTCTCGACCCAAACGACCGGATGTATATCGGCGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU487194 False 583 TUCP 0.39 1 10188822 10189404
TU487195 True 90 TUCP 0.36 1 10189315 10189404

Neighbor

gene id symbol gene type direction distance location
CI01000304_10177319_10186557 ARRB2.L, ARRB2A, ARRB2, ARRB2B coding upstream 2157 10177319 ~ 10186665 (+)
CI01000304_10172353_10175399 AP4M1 coding upstream 13128 10172353 ~ 10175694 (+)
CI01000304_10112119_10114490 TMEM88A coding upstream 73996 10109978 ~ 10114826 (+)
CI01000304_10093597_10099497 KDM6BA, KDM6BB, KDM6B coding upstream 89325 10093597 ~ 10099497 (+)
CI01000304_09976509_10020020 EFNB3A coding upstream 168247 9976509 ~ 10020575 (+)
CI01000304_10256417_10260924 NA coding downstream 63328 10256223 ~ 10260924 (+)
CI01000304_10276598_10283032 SLC25A1, SLC25A1-B, SLC25A1A coding downstream 83703 10276598 ~ 10283750 (+)
CI01000304_10292429_10311478 LTN1 coding downstream 99534 10292429 ~ 10311728 (+)
CI01000304_10316482_10319012 NA coding downstream 123413 10316308 ~ 10319017 (+)
CI01000304_10327313_10328936 NA coding downstream 134366 10327261 ~ 10329392 (+)
G424337 NA non-coding upstream 35418 10153184 ~ 10153404 (+)
G424336 NA non-coding upstream 36281 10152227 ~ 10152541 (+)
G424334 NA non-coding upstream 38824 10148454 ~ 10149998 (+)
G424257 NA non-coding upstream 51181 10135492 ~ 10137641 (+)
G424246 NA non-coding upstream 67378 10116343 ~ 10127322 (+)
G424351 NA non-coding downstream 26225 10219120 ~ 10221115 (+)
G424366 NA non-coding downstream 50084 10242979 ~ 10243213 (+)
G424376 NA non-coding downstream 60152 10253047 ~ 10253272 (+)
CI01000304_10451536_10470518 CD209 non-coding downstream 266530 10450410 ~ 10471255 (+)
CI01000304_10528999_10530630 NA non-coding downstream 330366 10525290 ~ 10530847 (+)
CI01000304_09564068_09565679 HRH2B other upstream 623249 9561005 ~ 9565778 (+)
G423614 NA other upstream 1239400 8949036 ~ 8949422 (+)
CI01000304_08671901_08672203 NA other upstream 1516267 8671770 ~ 8672555 (+)
CI01000304_08232073_08235598 NA other upstream 1953862 8231293 ~ 8235655 (+)
CI01000304_10555326_10571933 NA other downstream 362391 10555216 ~ 10572164 (+)
G425718 NA other downstream 2235810 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 3363556 13578049 ~ 13595097 (+)
G426312 NA other downstream 4137153 14330048 ~ 14330886 (+)
G426828 NA other downstream 4755995 14948890 ~ 14950592 (+)

Expression


Co-expression Network