G425052


Basic Information

Item Value
gene id G425052
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11066492 ~ 11072156 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU488082
GCCAATGGCAGCCACTTCATCATCTTTGACCCAGGCGAAGGTGGAGTAATCAGAGGCACTTTTGAAGCCAATCTGCACGCAGAGATATAAATCACCTCTATCCGATCCAGTCCCAGGTTGAGGACTCAAAGTTTTCCAGGATGGTGTAGGTGAATGTGGCATTTTCATCTGCACTCCAGTGTTCCTCCACTGTCAGTGTGACTAGAGGCGTCTCCACCTTTTTTCTCATCTGCATGAAGCGATCAAAGAGAGATACATTATATTTTTGGACTAAATGTCATGTGCACTGAAAGCAGGTTAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU488082 True 304 lncRNA 0.45 3 11066492 11072156

Neighbor

gene id symbol gene type direction distance location
CI01000304_11011297_11032025 NA coding upstream 34406 11009578 ~ 11032086 (+)
CI01000304_10927170_10992558 NA coding upstream 73934 10927170 ~ 10992558 (+)
CI01000304_10586097_10589143 NA coding upstream 476884 10585348 ~ 10589608 (+)
CI01000304_10577811_10579298 NA coding upstream 485955 10577701 ~ 10580537 (+)
CI01000304_10555326_10571933 NA coding upstream 494328 10555216 ~ 10572164 (+)
CI01000304_11140964_11155540 PAXBP1 coding downstream 68808 11140964 ~ 11155892 (+)
CI01000304_11170412_11182604 SLC7A1 coding downstream 97710 11169866 ~ 11182641 (+)
CI01000304_11215537_11253484 MTUS2A coding downstream 142781 11214937 ~ 11253581 (+)
CI01000304_11264394_11268134 SLC46A3 coding downstream 192238 11264394 ~ 11268134 (+)
CI01000304_11288992_11297645 VPS36 coding downstream 216836 11288992 ~ 11298149 (+)
G424936 NA non-coding upstream 935 11064518 ~ 11065557 (+)
G424794 NA non-coding upstream 215917 10850310 ~ 10850575 (+)
G424790 NA non-coding upstream 229017 10837185 ~ 10837475 (+)
G424547 NA non-coding upstream 488239 10532246 ~ 10543770 (+)
CI01000304_10528999_10530630 NA non-coding upstream 535691 10525290 ~ 10530847 (+)
G425058 NA non-coding downstream 173 11072329 ~ 11072732 (+)
G425027 NA non-coding downstream 43964 11116120 ~ 11122174 (+)
G425073 NA non-coding downstream 65233 11137389 ~ 11137708 (+)
G425048 NA non-coding downstream 120029 11192185 ~ 11209025 (+)
G425081 NA non-coding downstream 208371 11280527 ~ 11280867 (+)
G424251 NA other upstream 873597 10188822 ~ 10189404 (+)
G424246 NA other upstream 939170 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 1500919 9561005 ~ 9565778 (+)
G423614 NA other upstream 2117070 8949036 ~ 8949422 (+)
G425718 NA other downstream 1356549 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 2484295 13578049 ~ 13595097 (+)
G426312 NA other downstream 3257892 14330048 ~ 14330886 (+)
G426828 NA other downstream 3876734 14948890 ~ 14950592 (+)
G427860 NA other downstream 4813298 15885454 ~ 15889591 (+)

Expression


Co-expression Network