G425228


Basic Information

Item Value
gene id G425228
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11266326 ~ 11267097 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU488283
TCATTACAGCAGCTTTAATTATATCCTTATTTTTGCAATTCTGTTTTGTGCCACTAGAGGCACAAACCTTACACACCAAATGATAGAACTTGTGAATAAGGTCAGAATTATCATAATCACCCTGAAAAAGGCAAAAGCAGCAAGCATGAGCAACAGCACTACATTCCTTCTCCTTTTGGAGGACGCAAAGAGCAGGTAGACGCCCTGCAGACGGGCGGTAAGAGCTTGAGACTGTCGCAGCCGAGGGGCTTCTGAAGCTGAGGGGCTGGACATTGACAGAATGGGATTTGGAAGAACCAGGGACTCCTTCAAAACCACCAGCACATAGAGGAGGTTTACCAGATGCACACAGGCTGCGGTGAGGAAGGGCCAAGTGAAGCCAGCTGCTTCAATGTAGAATCCAGTGCACAGAGAAGCTAAGCCAGTCAAAACCCCTAAAATCATGTCCAGTCGAGCCATTCGGACAGTTTTCTGTCCTTCTGGATCTTCTCCGCAGACATCAGCCACATAGGCGAAACATCCACCAATCAGACTGGCGGGTCCGCCCATCAGGCCTGTTAGGAAGGAGGCAGCTAACAGGTAATTGAGGTTGAAGGAGAATCTACTGACCAAAGCGTAGCTCAGGGAGAACAGAGTGTCGCCCACCAGAGGAGGAACGATGGCAACTTTACGCCCGCAGTAGTCACTGTATGAGACCAGGAGCAGTGCGGATATGAGACTGGGAACGAGAAAGCACAGTTCACTCTGGAGGAGGAAAAGCGATGTCTCCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU488283 True 772 lncRNA 0.50 1 11266326 11267097

Neighbor

gene id symbol gene type direction distance location
CI01000304_11124801_11135838 NA coding downstream 128984 11124157 ~ 11137342 (-)
CI01000304_11110559_11121354 SLC43A2B coding downstream 144155 11110463 ~ 11122171 (-)
CI01000304_11083948_11091592 PITPNAB, PITPNA coding downstream 174734 11083838 ~ 11091592 (-)
CI01000304_11065581_11077156 NA coding downstream 189170 11065239 ~ 11077156 (-)
CI01000304_10812673_10812980 NA coding downstream 451088 10812533 ~ 10815238 (-)
CI01000304_11272501_11275583 STOM, STOML3B, STOML3 coding upstream 5127 11272224 ~ 11275583 (-)
CI01000304_11282245_11288087 PROSER1 coding upstream 15044 11282141 ~ 11288087 (-)
CI01000304_11304660_11306789 NA coding upstream 37463 11304560 ~ 11306871 (-)
CI01000304_11330383_11335607 SMPD1 coding upstream 62545 11329642 ~ 11336120 (-)
CI01000304_11338304_11348212 ILK coding upstream 70922 11338019 ~ 11348212 (-)
G425188 NA non-coding downstream 9030 11205622 ~ 11257296 (-)
G425190 NA non-coding downstream 14622 11205916 ~ 11251704 (-)
G425187 NA non-coding downstream 16115 11245182 ~ 11250211 (-)
G425222 NA non-coding downstream 33298 11231090 ~ 11233028 (-)
G425215 NA non-coding downstream 41374 11223368 ~ 11224952 (-)
G425229 NA non-coding upstream 1100 11268197 ~ 11268449 (-)
G425230 NA non-coding upstream 2088 11269185 ~ 11270488 (-)
G425204 NA non-coding upstream 13879 11280976 ~ 11281204 (-)
G425269 NA non-coding upstream 162520 11429617 ~ 11430150 (-)
G425479 NA non-coding upstream 180530 11447627 ~ 11447954 (-)
G424808 NA other downstream 723661 10444355 ~ 10542665 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other downstream 1073431 10190574 ~ 10192357 (-)
CI01000304_10160458_10161768 VAMP2 other downstream 1101996 10160458 ~ 10163762 (-)
CI01000304_09737662_09738777 NA other downstream 1526855 9736746 ~ 9738777 (-)
CI01000304_09566730_09575706 NA other downstream 1697292 9566730 ~ 9575706 (-)
G425580 NA other upstream 601580 11868677 ~ 11872906 (-)
G426106 NA other upstream 1069604 12336701 ~ 12340228 (-)
CI01000304_12559311_12559998 NA other upstream 1291757 12558854 ~ 12560135 (-)
G426147 NA other upstream 1428901 12719497 ~ 12805926 (-)

Expression


Co-expression Network