G425230


Basic Information

Item Value
gene id G425230
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11269185 ~ 11270488 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU488285
TTATAGCCTACTGTTAGCTTTTATATCTGACGACTTTATTTAGGCTTCAAAATGCATAAATGTTGTGTTAACTTGTAAAGATTATCTTGATAGACAAAACGTAAGTGTCATAACCCTTTGTTAAAAGGTGCGTTCACGCCACCTTGTAATTCCTGTAGGTATGAGATTCTAGCTTGTAAAAAGCGGTCACGTCCTCGTAGAGCTCGTAATTACAGCTTGTAAACTGGGAGTTTTCTTAAAGCTCCCAGGTGTACCACGTGGCCGCTGTACCACCTGACCGCTGTAGATTCATTTAAGCGTTGATAGTGGTGCCATAGAAACGCATAATTCCAAGTTCAAGGACGTGAACAGCTCCGAATATAACGTCACGTGTTATCATCTCAAGATTCCGGTAAATACAAGGTGGCGTGAACGCAGCAAAACACAGAGCTTATTTTTTGCGATTTTCCAAAAGTCTATGGGAAAAATGCATTGGCTTTCGATCGAGGGAACCCGTGCGCCGCTGACTTCCGGGTTGTCCTACAAAAACACGTCATCCCTGAGATACTCTATTGTGACCAAAGTAATATTACAGTGACAAAACACTTGTTATTTTCAGCAATTTAACTAAACACACTAACACAGTCGACGGAGGCGTCGTGTTTTGTTTATGCGTGTACAGCCCGGGTGTGCCTCATACGTCCTGAAAAGTGAAGCTGCGGGCTCTTTGATCGCCCCCAGGTGGCTGGATTCAGTACAGGTCATAAACCTCGCCCTTTCCATGCAAGCGAACCGGACTTGAGTCAAAACAAAAAAATTAATTACGCTTCAAATAAAATTTTCCGAAAGATGGTTTTGGTCATTTAAGGTAGTTGTTATCATGCTGATATATATTCAATTGTTCGTTTTTGTGATAAGTTTGATTTTAGCTAGCAATTTGATGCTATAGAAACGGGGCGTGTCGTCATGATTGACAGTTGTGATTGACAGCTTCTCTGAGGACTGTCGGAGCTTCGAGGGGAGATTGAAGATATATAACTAACTAATAATTTTCGATTTCTGTGTTATTTCACACCGACAAAATTAGTTGTTCAGCAATAAATTGTACTAATCGACCTACAGGATTTGACGGATCACTTAACATTTTTTGGTAACATTAAATGTGGGCTTTATAAGCGAATTAATAAATGTTATTAGTTAAGATAACACGCCTAACGTTAGCCATGTCGGGAAAAAGCAGGTGATTGTTATCTGGCAGTTACTAATTATTTTTATGGGTATAAAATAATAATTAGCAGGACAAAACTAATGATAGCCTACTCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU488285 True 1304 lncRNA 0.39 1 11269185 11270488

Neighbor

gene id symbol gene type direction distance location
CI01000304_11124801_11135838 NA coding downstream 131843 11124157 ~ 11137342 (-)
CI01000304_11110559_11121354 SLC43A2B coding downstream 147014 11110463 ~ 11122171 (-)
CI01000304_11083948_11091592 PITPNAB, PITPNA coding downstream 177593 11083838 ~ 11091592 (-)
CI01000304_11065581_11077156 NA coding downstream 192029 11065239 ~ 11077156 (-)
CI01000304_10812673_10812980 NA coding downstream 453947 10812533 ~ 10815238 (-)
CI01000304_11272501_11275583 STOM, STOML3B, STOML3 coding upstream 1736 11272224 ~ 11275583 (-)
CI01000304_11282245_11288087 PROSER1 coding upstream 11653 11282141 ~ 11288087 (-)
CI01000304_11304660_11306789 NA coding upstream 34072 11304560 ~ 11306871 (-)
CI01000304_11330383_11335607 SMPD1 coding upstream 59154 11329642 ~ 11336120 (-)
CI01000304_11338304_11348212 ILK coding upstream 67531 11338019 ~ 11348212 (-)
G425229 NA non-coding downstream 736 11268197 ~ 11268449 (-)
G425228 NA non-coding downstream 2088 11266326 ~ 11267097 (-)
G425190 NA non-coding downstream 17481 11205916 ~ 11251704 (-)
G425204 NA non-coding upstream 10488 11280976 ~ 11281204 (-)
G425269 NA non-coding upstream 159129 11429617 ~ 11430150 (-)
G425479 NA non-coding upstream 177139 11447627 ~ 11447954 (-)
G425517 NA non-coding upstream 308743 11579231 ~ 11579432 (-)
G425533 NA non-coding upstream 328401 11598889 ~ 11599266 (-)
G424808 NA other downstream 726520 10444355 ~ 10542665 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other downstream 1076290 10190574 ~ 10192357 (-)
CI01000304_10160458_10161768 VAMP2 other downstream 1104855 10160458 ~ 10163762 (-)
CI01000304_09737662_09738777 NA other downstream 1529714 9736746 ~ 9738777 (-)
CI01000304_09566730_09575706 NA other downstream 1700151 9566730 ~ 9575706 (-)
G425580 NA other upstream 598189 11868677 ~ 11872906 (-)
G426106 NA other upstream 1066213 12336701 ~ 12340228 (-)
CI01000304_12559311_12559998 NA other upstream 1288366 12558854 ~ 12560135 (-)
G426147 NA other upstream 1425510 12719497 ~ 12805926 (-)

Expression


Co-expression Network