G425081


Basic Information

Item Value
gene id G425081
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11280527 ~ 11280867 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU488111
TCTACGAAAAGAGCTTTTATTTCATTAGGCTCTTAGAACATACTAATCTAAATCTACCATATTCTTTATTATATTTTATAATATATAATGGAAACAAATGTGAGTACCACAGACTTTGAGATCTACATATATTGTATACATGCAAAATTCATGGTTCTAACCTTAAATTCTGTCATTATTTACGCACCCTCATGTCTTTCCACACCCGTAAGACCTTCGTTCATCTTCGAAACACAAATTAAGATATTTTAAATGAAA
>TU488112
TCTACGAAAAGAGCTTTTATTTCATTAGGCTCTTAGAACATACTAATCTAAATCTACCATATTCTTTATTATATTTTATAATATATAATGGAAACAAATGTGAGTACCACAGACTTTGAGATCTACATATATTGTATACATGCAAAATTCATGGTTCTAACCTTAAATTCTGTCATTATTTACGCACCCTCATGTCTTTCCACACCCGTAAGACCTTCGTTCATCTTCGAAACACAAATTAAGATATTTTAAATGAAATCTGATGGCTCAGTGAGGCCTGCATCGCCACTCCCTTTTTCAATGCCCAGAAAGCTACTAAAACATATTTAAAACAGTTCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU488111 False 258 lncRNA 0.29 1 11280527 11280784
TU488112 True 341 lncRNA 0.33 1 11280527 11280867

Neighbor

gene id symbol gene type direction distance location
CI01000304_11264394_11268134 SLC46A3 coding upstream 12393 11264394 ~ 11268134 (+)
CI01000304_11215537_11253484 MTUS2A coding upstream 26946 11214937 ~ 11253581 (+)
CI01000304_11170412_11182604 SLC7A1 coding upstream 97886 11169866 ~ 11182641 (+)
CI01000304_11140964_11155540 PAXBP1 coding upstream 124635 11140964 ~ 11155892 (+)
CI01000304_11011297_11032025 NA coding upstream 248441 11009578 ~ 11032086 (+)
CI01000304_11288992_11297645 VPS36 coding downstream 8125 11288992 ~ 11298149 (+)
CI01000304_11301321_11304134 THSD1 coding downstream 20011 11300878 ~ 11304432 (+)
CI01000304_11308263_11317998 TPTE2, TPTE coding downstream 26181 11307048 ~ 11318063 (+)
CI01000304_11318496_11322260 NA coding downstream 37569 11318436 ~ 11322489 (+)
CI01000304_11323923_11325889 NA coding downstream 42628 11322230 ~ 11325905 (+)
G425048 NA non-coding upstream 71502 11192185 ~ 11209025 (+)
G425073 NA non-coding upstream 142819 11137389 ~ 11137708 (+)
G425027 NA non-coding upstream 158353 11116120 ~ 11122174 (+)
G425058 NA non-coding upstream 207795 11072329 ~ 11072732 (+)
G425052 NA non-coding upstream 208371 11066492 ~ 11072156 (+)
G425044 NA non-coding downstream 96 11280963 ~ 11281207 (+)
G425085 NA non-coding downstream 41064 11321931 ~ 11321987 (+)
G425030 NA non-coding downstream 48801 11329668 ~ 11338444 (+)
G425036 NA non-coding downstream 66412 11347279 ~ 11355129 (+)
G425049 NA non-coding downstream 67186 11348053 ~ 11350064 (+)
CI01000304_10555326_10571933 NA other upstream 724823 10555216 ~ 10572164 (+)
G424251 NA other upstream 1087632 10188822 ~ 10189404 (+)
G424246 NA other upstream 1153205 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 1714954 9561005 ~ 9565778 (+)
G423614 NA other upstream 2331105 8949036 ~ 8949422 (+)
G425718 NA other downstream 1147838 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 2275584 13578049 ~ 13595097 (+)
G426312 NA other downstream 3049181 14330048 ~ 14330886 (+)
G426828 NA other downstream 3668023 14948890 ~ 14950592 (+)
G427860 NA other downstream 4604587 15885454 ~ 15889591 (+)

Expression


Co-expression Network