G425085


Basic Information

Item Value
gene id G425085
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11321931 ~ 11321987 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU488117
GTTTTCCTTCTGTTCACACATTCAACATGCTGGTGCAAAAGCTAAGCTGGATCATTTTGATGCTCGTACTGTGTCAACATGGTGTAGAAGCGACAAGGAAACATGTCTGTGAAGGAAGATCTGAATACCTCAGATGTCGTGAGTAATTTAGTAATTTTAAGTTATATTTTTGGTGATTTGTGCCAAAATAGGACAGTATGAGAGAGAAAGAAAGCAATGGAAGAGAAAAGAGGGGAACAGGATCAGGAGGGACCCTCTTCAACTGCGTGCAGTATGCTTAAACTTTACCTCAAGTCTAATGATTTTTTATTTTTTTTTTACATGTGTCAGATCAGGGACTAATAAAGGTCGTTTATGCCAACTATGGGCGAACTGATCACAGAACATGCGCTAGAGGAAAAACACATAAATTAATCTCAAATACACAGTGTTTCCAAGAAACAGCCCTCCATATAAGTCCTTTCGGTAAGATTTACATAGCTAAGAAAATTTTATTTTCATTTTATATATAATTTTACAAGAGCAACAATAATATAATTTTTTTGTAATGGGACTTATAAATACCTGGATGTGTCTTATGAATGTCAAGAATGTGGAACAGGTGTTTTATATAAATAATTTTCTAAACCTATCCTAAATGTTTAAGTTGTAATTAATCACAAAATTCTTTACCTGGCTTTAGACCATCTATGTAGATGATAATAAATAATTTGTCCCCTTGGAATTATAAGGTTATGTGACATTTTTGTCAAAACTGAGTTATTCACATATTCTTATTCTGTGACAAATTTTTTACATTATGTAATGTTTTTGGTAATGTTGAGTACATTTGGGGACTTTTTTATTTAGAAAACAAAGAGGTTATATCTACAAAGTCCAATGGAATGCAAAAACTTTGAAGCTCAATATCTCAGAACTGCTCAGAATGCAGACAGAACCTTATAATTCCAAGTGGACGAGCTGTTGTTGTTGTTGTTGTTTTACCTTATTTACTTTACCTGCATTTGGAAGAAGTCTTGTCAGCTAGTGCTTCAAATTCTGTCTACTCTGATCCATGTCGGCGTGTCCATAGGTATCTGGAAGTGACATAAAGCTGTATAGCCTATAATTTTGTGATTATCCTGCCACATAAATGTATTTTGTATTTTTTTGTGTGTGTTTTAAATGAAAACAGTCTCTCTCTATTATTGATATTGGATGCTGAAAATCTTGTTTTTGGTCTGTGAAATAGTGATTTCACAGATATTTTAGAAATGGGCTATCATTATCATGTATCTATATCTATTATATTATCATTTATCTGTACGTAAATGTATAAAAACTGCAATTTTGTCAAACAGCAAACTGTATAAAAATAAATAAAACAGCACCATCTA
>TU488118
GTTTTCCTTCTGTTCACACATTCAACATGCTGGTGCAAAAGCTAAGCTGGATCATTTTGATGCTCGTACTGTGTCAACATGGTGTAGAAGCGACAAGGAAACATGTCTGTGAAGGAAGATCTGAATACCTCAGATGTCATCAGGGACTAATAAAGGTCGTTTATGCCAACTATGGGCGAACTGATCACAGAACATGCGCTAGAGGAAAAACACATAAATTAATCTCAAATACACAGTGTTTCCAAGAAACAGCCCTCCATATAAGTCCTTTCGGTAAGATTTACATAGCTAAGAAAATTTTATTTTCATTTTATATATAATTTTACAAGAGCAACAATAATATAATTTTTTTGTAATGGGACTTATAAATACCTGGATGTGTCTTATGAATGTCAAGAATGTGGAACAGGTGTTTTATATAAATAATTTTCTAAACCTATCCTAAATGTTTAAGTTGTAATTAATCACAAAATTCTTTACCTGGCTTTAGACCATCTATGTAGATGATAATAAATAATTTGTCCCCTTGGAATTATAAGGTTATGTGACATTTTTGTCAAAACTGAGTTATTCACATATTCTTATTCTGTGACAAATTTTTTACATTATGTAATGTTTTTGGTAATGTTGAGTACATTTGGGGACTTTTTTATTTAGAAAACAAAGAGGTTATATCTACAAAGTCCAATGGAATGCAAAAACTTTGAAGCTCAATATCTCAGAACTGCTCAGAATGCAGACAGAACCTTATAATTCCAAGTGGACGAGCTGTTGTTGTTGTTGTTGTTTTACCTTATTTACTTTACCTGCATTTGGAAGAAGTCTTGTCAGCTAGTGCTTCAAATTCTGTCTACTCTGATCCATGTCGGCGTGTCCATAGGTATCTGGAAGTGACATAAAGCTGTATAGCCTATAATTTTGTGATTATCCTGCCACATAAATGTATTTTGTATTTTTTTGTGTGTGTTTTAAATGAAAACAGTCTCTCTCTATTATTGATATTGGATGCTGAAAATCTTGTTTTTGGTCTGTGAAATAGTGATTTCACAGATATTTTAGAAATGGGCTATCATTATCATGTATCTATATCTATTATATTATCATTTATCTGTACGTAAATGTATAAAAACTGCAATTTTGTCAAACAGCAAACTGTATAAAAATAAATAAAACAGCACCATCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU488117 False 57 lncRNA 0.32 1 11321931 11321987
TU488118 True 57 lncRNA 0.32 1 11321931 11321987

Neighbor

gene id symbol gene type direction distance location
CI01000304_11308263_11317998 TPTE2, TPTE coding upstream 3868 11307048 ~ 11318063 (+)
CI01000304_11301321_11304134 THSD1 coding upstream 17499 11300878 ~ 11304432 (+)
CI01000304_11288992_11297645 VPS36 coding upstream 23782 11288992 ~ 11298149 (+)
CI01000304_11264394_11268134 SLC46A3 coding upstream 53797 11264394 ~ 11268134 (+)
CI01000304_11215537_11253484 MTUS2A coding upstream 68350 11214937 ~ 11253581 (+)
CI01000304_11449463_11453214 NA coding downstream 125442 11448966 ~ 11453315 (+)
CI01000304_11570457_11574856 CHORDC1 coding downstream 246933 11570457 ~ 11575290 (+)
CI01000304_11582257_11610398 GRM5, GRM5A coding downstream 258284 11581808 ~ 11610611 (+)
CI01000304_11613446_11620345 RAB38 coding downstream 289922 11613446 ~ 11620563 (+)
CI01000304_11676155_11681977 MAP3K7CL coding downstream 352631 11676155 ~ 11683131 (+)
G425044 NA non-coding upstream 40724 11280963 ~ 11281207 (+)
G425081 NA non-coding upstream 41064 11280527 ~ 11280867 (+)
G425048 NA non-coding upstream 112906 11192185 ~ 11209025 (+)
G425073 NA non-coding upstream 184223 11137389 ~ 11137708 (+)
G425027 NA non-coding upstream 199757 11116120 ~ 11122174 (+)
G425030 NA non-coding downstream 6144 11329668 ~ 11338444 (+)
G425036 NA non-coding downstream 23755 11347279 ~ 11355129 (+)
G425049 NA non-coding downstream 24529 11348053 ~ 11350064 (+)
G425273 NA non-coding downstream 109256 11432780 ~ 11433041 (+)
G425277 NA non-coding downstream 112146 11435670 ~ 11446373 (+)
CI01000304_10555326_10571933 NA other upstream 766227 10555216 ~ 10572164 (+)
G424251 NA other upstream 1129036 10188822 ~ 10189404 (+)
G424246 NA other upstream 1194609 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 1756358 9561005 ~ 9565778 (+)
G423614 NA other upstream 2372509 8949036 ~ 8949422 (+)
G425718 NA other downstream 1105181 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 2232927 13578049 ~ 13595097 (+)
G426312 NA other downstream 3006524 14330048 ~ 14330886 (+)
G426828 NA other downstream 3625366 14948890 ~ 14950592 (+)
G427860 NA other downstream 4561930 15885454 ~ 15889591 (+)

Expression


Co-expression Network