Gene
RNA
| Item | Value |
|---|---|
| gene id | G425030 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 11329668 ~ 11338444 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU488056 | True | 1610 | lncRNA | 0.37 | 2 | 11329668 | 11338444 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_11323923_11325889 | NA | coding | upstream | 3763 | 11322230 ~ 11325905 (+) |
| CI01000304_11318496_11322260 | NA | coding | upstream | 7179 | 11318436 ~ 11322489 (+) |
| CI01000304_11308263_11317998 | TPTE2, TPTE | coding | upstream | 11605 | 11307048 ~ 11318063 (+) |
| CI01000304_11301321_11304134 | THSD1 | coding | upstream | 25236 | 11300878 ~ 11304432 (+) |
| CI01000304_11288992_11297645 | VPS36 | coding | upstream | 31519 | 11288992 ~ 11298149 (+) |
| CI01000304_11449463_11453214 | NA | coding | downstream | 110522 | 11448966 ~ 11453315 (+) |
| CI01000304_11570457_11574856 | CHORDC1 | coding | downstream | 232013 | 11570457 ~ 11575290 (+) |
| CI01000304_11582257_11610398 | GRM5, GRM5A | coding | downstream | 243364 | 11581808 ~ 11610611 (+) |
| CI01000304_11613446_11620345 | RAB38 | coding | downstream | 275002 | 11613446 ~ 11620563 (+) |
| CI01000304_11676155_11681977 | MAP3K7CL | coding | downstream | 337711 | 11676155 ~ 11683131 (+) |
| G425085 | NA | non-coding | upstream | 6144 | 11321931 ~ 11321987 (+) |
| G425044 | NA | non-coding | upstream | 48461 | 11280963 ~ 11281207 (+) |
| G425081 | NA | non-coding | upstream | 48801 | 11280527 ~ 11280867 (+) |
| G425048 | NA | non-coding | upstream | 120643 | 11192185 ~ 11209025 (+) |
| G425073 | NA | non-coding | upstream | 191960 | 11137389 ~ 11137708 (+) |
| G425036 | NA | non-coding | downstream | 8835 | 11347279 ~ 11355129 (+) |
| G425049 | NA | non-coding | downstream | 9609 | 11348053 ~ 11350064 (+) |
| G425273 | NA | non-coding | downstream | 94336 | 11432780 ~ 11433041 (+) |
| G425277 | NA | non-coding | downstream | 97226 | 11435670 ~ 11446373 (+) |
| G425294 | NA | non-coding | downstream | 131322 | 11469766 ~ 11470005 (+) |
| CI01000304_10555326_10571933 | NA | other | upstream | 773964 | 10555216 ~ 10572164 (+) |
| G424251 | NA | other | upstream | 1136773 | 10188822 ~ 10189404 (+) |
| G424246 | NA | other | upstream | 1202346 | 10116343 ~ 10127322 (+) |
| CI01000304_09564068_09565679 | HRH2B | other | upstream | 1764095 | 9561005 ~ 9565778 (+) |
| G423614 | NA | other | upstream | 2380246 | 8949036 ~ 8949422 (+) |
| G425718 | NA | other | downstream | 1090261 | 12436554 ~ 12436605 (+) |
| CI01000304_13578347_13595075 | NA | other | downstream | 2218007 | 13578049 ~ 13595097 (+) |
| G426312 | NA | other | downstream | 2991604 | 14330048 ~ 14330886 (+) |
| G426828 | NA | other | downstream | 3610446 | 14948890 ~ 14950592 (+) |
| G427860 | NA | other | downstream | 4547010 | 15885454 ~ 15889591 (+) |
