G425338


Basic Information

Item Value
gene id G425338
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11565954 ~ 11569871 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU488403
GCAGTCACCTGGAGGACACTTGTTCCATGTCGAGAGTTTTCCTTCACAGTGCCCCTCACTGCAAATTCTGAGAAGTATGGCTCGTTGAGGTTCTCATTGACATCAATGACTTCCACTTCAAGATAAGACTCGGAGCGAAGCTTCACTGGAAAACCCAAGTCCTCTGCAACCACTGAGAGATTGTAGAATTGTTGCTTCTCATAGTCCAGGTCCTTGGCCACCTTAATGGCGCCACTTTCAGCATGGATCTTAAATGTCCCATTGAAGTCATTGGACAGGGAGTATCTCACCCATCCACCAGATCCAATGTCTGGGTCTTGCGTTTGCAGCCAAGCTACAACTGCACCTATAGGAAGGTCCTCCAACACACGGCAACTGTAACTCCTGGGAATAAACATAGGGGCGCAGTCATTTACATCCTCGAGGTACACTCTCAGGGTTGTCTCTGAGAACATCTGATTCCCTCTTTCTGCCTTATCTCTAGCCTGAATTTTTAGGGTGATTTCCGAGATGGACTCCCTGTCCAACTGACTAGACACATAAACAGAGCCGGTCTCACTGTTTATGGCAAACAGAGGGGTGTTTGTTAACAAGGTGTATGAGATTTCACCGTTCTGACCGAGATCATCATCTGAGGCTGTGACCTGGATCACTTCTGTGCCGATGGCTGCATTCTCTGGTACAACAGCAGTATAGCTCTTGAGGGAGAACTTTGGGCTGTTATCATTCACATCATCAATGTTAACTGTCAGCAATCTCCAGCTGGATTTCTGTGGAAGGCCCAAGTCATATACAGTTATGTTAAGGAGGTACCGGTCTGATCGCTCACGGTCCAAAGGCTGATAAATGTAAATTAGGCCGCTTTCCATGTCAATATTGAAGCAGCTGTCGATGTTCCCATCTGATATGGCATGCAGGACGCGACCATTGAAGCCTGTGTCACCATCATTCGTGTTCACTTGAAGGACACTGGCACCCACAGGCATGTCCTCACGAACTACAATATCTGATGGAAAGGATTCAAATTGAGGTGTCTGTCTGTTGACAGAAAACAGATCTGTGTAGCCTTCATCCACTTTGGATTTGCTAATAGCGGAGGCTCTTTTCAGAAGTTTCTCAGCCAACTTTTGTGCAACTTTTGTGTCTCGACAATTGAAACTCCTTGCTGCCATTCTGCCTCTGACCAATGATATATTTACAAAGGTGGGTTCGGAAAGCAGCTCGCCATCTGACGCAGCTATTATCAAGTTGAACTGTTCATTCTTTACACTTAGTGCAGTGAGGGGTCTTTGCAATGACAACATTCCAGAGTTTGGGTTAAGACTGAAGATATCTTGCTCATTTCCAGACAGAATCTCATATTTAACCAGCCCAAGCTCATCAATATCAATGGCAGACATGATGATGATCGTCTGGCCCACAGGAAAATCACGTCCTATTGAACCTTTACATGACACACGCTCAAAAAGGGGTTGGTTGTCATTAATGTTCAACACTCGTACCGTGACATTGACTTCACTTTCTCGCCTGTAAGGAGAGCCCCAGTCTGAGGCTCGGACAGCAAACACGTATGTCTCCAAAGAAGATTCAAAATCCAGTTCTTTGGATGTTGTCAGCTCTCCAGTATTTTGGTTGATGATGAACGGGAGGGGCTGAAGGCTGGCTATGCTGTATGTTATGCATCCATTGTCACCTTTATCATCATCCACCGCTGTTACAGTGAGAATGACAGTGCCAATGGGGATGCTCTCATTGACAGAGACTTCGTAAGATGTGCTGGTAAACATCGGGGAGTTGTTGTTAGCATCCTCAATTGTGATTTGCACCTTTGTCGTCATGCCACTCACTCTCTCCATCACTTCCAAATCAAAGAGCTCCTGGCTTAATGTGGTAAACTGTTGCGCTGTTGAGATGACACCAGTGAGTGGATTAATGATAAAATAAATCGAATCTGAGGTCAGGCTTAGGGCGTAGCTAATGACCGGTGGTCTTGGAGATATCCTCACAGTCTCTATAATGGTCCCTGGTGGTGCAATCTCGATAATTGAGGTTTTGTAAATCTTCTTTTCAAAACTCACCTTCACAGACTGTGGTTTTTTCACCAAGAGCTGAACAGTCTGAGTATTGGAAAGCCTTGGTGGTGTGCCTCTGTCTTTGGCTTGAAAAGTGAGATTGCAACCGTAAGGAAATTTATCCCAGTTGACTGGTTCAGACATCTTTAGCTTGTACTCATTTCCAAGTGGAGCTCTGTCAAAGAAAAACTGCTCCTGCGGGTCACCTGCGATGATGGCAACCCACTCAATTTCTCCATTGGGTCCCTCGTCCAAATCTTCAACAGTAACAATGGCGTATACTGGCTCTTTGTCTGATATTAAAGGGTAAAGTGCGATTGCATTCAGTGTTGGTGCGAACTCATTGATACGCACAACACTGATCACTAGTTTGGCTGTACTGCTAATACCACTGTTCCCATAAACCTTCATTCCACGATCCACTGCTAAAACTTCAAGGGCAAATCTGCTTTTCTTATCTGCATTGAGCTTGGCTGTGAGCGATACCACCCCACTGGTTGGGTGAACAGCAAACTCCTCCACATCTTCTTTGAAGAAATAGTAAAACTCGCCATTGGAGCCGATGTCTGCATCAGTGGCGAACACCTGAGCCACACTTGCTCCCAATGGAGTACTTTCTGGAATATCAATGGCATAGGAAGTGGGAGAAAACAAAGGTCGGAGGTCATTCATATCCATAATTTGAACATTAACTATCACAGAAGCCTGCAGCATGCCTTTGCCAGTTGCCCTAACTGTTAATGTATAATTATCCTGCACTTCACGATTTAGGATGGCAGCACTCCCACTGTTAGTCCGTATGCGGAGAAAGCAAAAGTCCCCCAACACAAATTCCTCAGCCTGAAACAGCCCCTCATCGTCTCCAGATTCAATTAAATATTTGATGTCCAAAGAGCCCAACTTAGATAGAGCAATCCCCATTTTAACCTCAGTCCTAATGTATGTCCGAGCTGCAGAGTTCTCATAAATGGTGGCATTGTAGATGGAGGCGGTAAACTGAAAGGAGAAGGACCCTCGCTCCTGCAGTTGCCCCAAACAAGGAAGCAGGTGGAGGAGCAATAAGAAGAAACGGGTGAGACGGATCCTCATACTGCCCCCAGGGCAGCTGTTTATAGCCATGCCATCAACCTCTGGCTTAGGGAGAAAGAAATCTCTGCGCTGCAGACGTCCAAGAGCCCGCTCCATGAAACTACATCCTTCACTTCTTTGCCATACAGGACTCACTGCCACTCACAGTTGACTGTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU488403 True 3319 lncRNA 0.46 2 11565954 11569871

Neighbor

gene id symbol gene type direction distance location
CI01000304_11449463_11453214 NA coding upstream 112639 11448966 ~ 11453315 (+)
CI01000304_11323923_11325889 NA coding upstream 240049 11322230 ~ 11325905 (+)
CI01000304_11318496_11322260 NA coding upstream 243465 11318436 ~ 11322489 (+)
CI01000304_11308263_11317998 TPTE2, TPTE coding upstream 247891 11307048 ~ 11318063 (+)
CI01000304_11301321_11304134 THSD1 coding upstream 261522 11300878 ~ 11304432 (+)
CI01000304_11570457_11574856 CHORDC1 coding downstream 586 11570457 ~ 11575290 (+)
CI01000304_11582257_11610398 GRM5, GRM5A coding downstream 11937 11581808 ~ 11610611 (+)
CI01000304_11613446_11620345 RAB38 coding downstream 43575 11613446 ~ 11620563 (+)
CI01000304_11676155_11681977 MAP3K7CL coding downstream 106284 11676155 ~ 11683131 (+)
CI01000304_11685224_11691071 NA coding downstream 115353 11685224 ~ 11691071 (+)
G425317 NA non-coding upstream 39055 11514772 ~ 11526899 (+)
G425316 NA non-coding upstream 53253 11512489 ~ 11512701 (+)
G425294 NA non-coding upstream 95949 11469766 ~ 11470005 (+)
G425277 NA non-coding upstream 119581 11435670 ~ 11446373 (+)
G425273 NA non-coding upstream 132913 11432780 ~ 11433041 (+)
G425354 NA non-coding downstream 51235 11621106 ~ 11621440 (+)
G425356 NA non-coding downstream 52934 11622805 ~ 11623009 (+)
G425358 NA non-coding downstream 54349 11624220 ~ 11624518 (+)
G425359 NA non-coding downstream 54720 11624591 ~ 11624842 (+)
G425361 NA non-coding downstream 55650 11625521 ~ 11625765 (+)
CI01000304_10555326_10571933 NA other upstream 1010250 10555216 ~ 10572164 (+)
G424251 NA other upstream 1373059 10188822 ~ 10189404 (+)
G424246 NA other upstream 1438632 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 2000381 9561005 ~ 9565778 (+)
G423614 NA other upstream 2616532 8949036 ~ 8949422 (+)
G425718 NA other downstream 858834 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 1986580 13578049 ~ 13595097 (+)
G426312 NA other downstream 2760177 14330048 ~ 14330886 (+)
G426828 NA other downstream 3379019 14948890 ~ 14950592 (+)
G427860 NA other downstream 4315583 15885454 ~ 15889591 (+)

Expression


Co-expression Network