G425550


Basic Information

Item Value
gene id G425550
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11701164 ~ 11703380 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU488656
TCTGTATGAAAAATTTAGTTTTATTGCTCTGAAGGCAGGTGATTTTAGGGTAGTAAGTGTAATATCATAATGTTGATTATGAAATAATAATAATGCAAAAAGTACAAACAGAAACTAACAACAGGTAAAGTGTGGGAACAACAAGGAAATGTTTTGTCCTGTCTCAAGAATCAGTGAACTCCACTCATTCACTTCTTTTTTTATATAAAAACCTGACTGAGAATACAGTCATGGAACACCGATATCAGTCTCTGGAATGTAATTAACTTTAGCTGTATTTAGAAAAGAAAAGACATCAAGAGGTAAGTCTTCATAACGACTTGATTAAATATTGATGCACTCAAAAAGAAAGAACAATTAAAAAGTCTAAGATTACCGTGTCTGAAATTAGCCCACAGGATAACCATAATCAGCCGGGAGCTAATTCACCGCTCACACTGATGTGGCTTTATCTGCCTCCCACATCCCCAGCGGTATTTCTAGAGCTGTGGCCTTCATGCCTTGAGCATCTCATGACAGACAAGACCAGGACATGCAGAATCACTCGTAAACAAAGAAATCTGCATTATCACAATGGAAAACTACACAACCCAGTCATGTCTATTGTGTGTCCTTGCAATACAAACCAGATCTTTCTTCCAAAGTTGATGTCAAACTCATGAGAGTTTCATAGCATGAAAGTCACCATGTAGCCCCGACCCTGTTCTCCACATCATTTCCTGTTGTTTCTACACTATCCTTATGACTAAAGGCCCCGATATACTTCAAGCGAAATTGAAGAACAAATTGGTGTGATGTAATTTCGAACAAAATCGGGCTAAAACGAAGTTTGTTTGAAGTTCGTTACTGGAGTATGAAACAGCTTGCCAAGCGAACATTCACTCCAGCTGGTAAACACCTTCGTACTACCATTGGTTTGTGGTGATTAGGTGTGCGCTGAGGCTCCGCCATCTTTGACATGGAAATCTTCTTCTGCTCATTTCTTCTGTTCAGTCTGTCAAGGTCAGATGGGAGTAAAATCATGAACACACCGGAGAGATGCTTTATAGTAGAAATTGAAGTTGTAATTCTAATCGTAAGAGACACTGACACTGTTTTTCATGTTTAAAGGAATAGTTCACCCAAGAATTTAAATTATCCCATAATTTACTCACCCTCAAGCCATCCAAGGTGTATAGGACTTTCTTCTTTCAGCTGAACACAATCAGAGTTATATTAAACAATATTCTGGCTGTTCCTAGCTTTGGAATGGCATTGAATAGTGTCTAAGTTTTTAACCCCTGAGCATTCCTGTAAAATTTGCCTAAAATGCCTAAAAAGTATGGAATGCCAAACCTGCCAATATTAAAAAAAAACATCACTTTTCTTCAGAAGGCATTTATTATCCACTGGAGTCGTATAGATTACTTTTATGATTGATGAATGCGCTTTTTTGGAGTGTTAGCATTCCACTGTACTACTGCCTGTGGTACATAGCTTTCAAAAGAGACCAAAACCATGCATATTCTGCAAATGGTTCAAGAACAGCATGCAATTTACTTTGGGTATTCCTTTTTCTACTATGGAATGCCAAACCTGGCAATATTAAAAATAAATAAATACATAAATAAATAAATAAATATACAAAGAAATGTAAAAAAGCAAAAAAGCAAAAATAAATATATAAATAAATATACAAAGAAAAGAAAAAAAAAATTATTTATACATTTATTTCCTTATTTATGCATATATTTTTTTCCACATTTATTTATTTATTTTTTCTTTTATTTATTTATACATTTAATTTCGACTTTTATTTATTTCCAAATTTGTTCATTTCCACATGTGTTCATTTCTACATTTCTTTATTTCTACATTTCTTTGTCCGTAGGGTAATGAGGAGGGCGTGGTTTACCTCAGACATAGTAACTGAGCTCAGAGTAGGCGAGAGCGAAGCGTTGAGGCCACAATGACACCTTGTGGTGTGCCCGAAATACAAGAAGTGTAGCCTACTGACAAGCCTGTTGGGATGAATGACTTGGATTGGCTATATGGCCAAAATCTTATATCACGGGTTAAGTCATATAATATCATCCTAACCATACTGTGTGACATGGATAGGCTACACTTTACACTTTACCGCAGGCAGTAGTACAGTGGAATGCTAACAGGTTAAAGCTCCAAAAAAGCACATTCATCAATCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU488656 True 2185 lncRNA 0.36 2 11701164 11703380

Neighbor

gene id symbol gene type direction distance location
CI01000304_11665326_11670757 CCT8 coding downstream 30204 11665259 ~ 11670960 (-)
CI01000304_11654405_11655792 NA coding downstream 45148 11653935 ~ 11656016 (-)
CI01000304_11638983_11647850 TMEM135 coding downstream 52079 11638413 ~ 11649085 (-)
CI01000304_11575414_11578638 NA coding downstream 122526 11575328 ~ 11578638 (-)
CI01000304_11526057_11569114 NA coding downstream 132050 11525999 ~ 11569114 (-)
CI01000304_11706322_11747949 GRIK1B, GRIK1, GRIK2, GRIK1A coding upstream 2835 11706215 ~ 11747949 (-)
CI01000304_11769604_11771720 NA coding upstream 66162 11769542 ~ 11771720 (-)
CI01000304_11773915_11805873 TIAM1B, TIAM1 coding upstream 69466 11772846 ~ 11808328 (-)
CI01000304_11845828_11848857 SOD1 coding upstream 142234 11845614 ~ 11849163 (-)
CI01000304_11850324_11861609 SCAF4, SCAF4A coding upstream 146397 11849777 ~ 11861609 (-)
G425549 NA non-coding downstream 2766 11696594 ~ 11698398 (-)
G425559 NA non-coding downstream 28466 11672362 ~ 11672698 (-)
G425533 NA non-coding downstream 101898 11598889 ~ 11599266 (-)
G425517 NA non-coding downstream 121732 11579231 ~ 11579432 (-)
G425479 NA non-coding downstream 253210 11447627 ~ 11447954 (-)
G425582 NA non-coding upstream 187580 11890960 ~ 11891233 (-)
G425992 NA non-coding upstream 281237 11984617 ~ 11984915 (-)
G425993 NA non-coding upstream 281948 11985328 ~ 11985695 (-)
G426052 NA non-coding upstream 340078 12043458 ~ 12044561 (-)
G426061 NA non-coding upstream 360999 12064379 ~ 12065037 (-)
CI01000304_11338304_11348212 ILK other downstream 344018 11338019 ~ 11348212 (-)
G424808 NA other downstream 1158499 10444355 ~ 10542665 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other downstream 1508269 10190574 ~ 10192357 (-)
CI01000304_10160458_10161768 VAMP2 other downstream 1536834 10160458 ~ 10163762 (-)
CI01000304_09737662_09738777 NA other downstream 1961693 9736746 ~ 9738777 (-)
G425580 NA other upstream 165297 11868677 ~ 11872906 (-)
G426106 NA other upstream 633321 12336701 ~ 12340228 (-)
CI01000304_12559311_12559998 NA other upstream 855474 12558854 ~ 12560135 (-)
G426147 NA other upstream 992618 12719497 ~ 12805926 (-)
G427057 NA other upstream 1804261 13507641 ~ 13507922 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location