G426061


Basic Information

Item Value
gene id G426061
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12064379 ~ 12065037 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU489239
TTCAAGGCCCAGTACATAAAAATGCATTTAGCATTGGAAATATGTAGCTGTGAACCAAGTACAAAAACACGATATCTCACCATAAATACCATTTCAAACATAAAGAATATTTCATCGTGCCCAAAATGTCGTGCTTGTGACTGTTAAATAGCCTCACAATCCTCTGTGAATATGAAAACAATCCACTGATTTTATTGCATAGCACATTTCTTTTTAAATATTATCAGCCTGATGAGGAATATAATTGTTAGGTGAAATGGATTTGACAATATGATGCTGGTTTTTCATAGATGAGTTCTTGTGGATATGTTTTTTGAATGCACACACAAACACTTGAACTTTGATGTGTCTAACAATGACGGTGAAGACAACAAAAATGTGATAGTTGATAGAACAAGTTGATAGAAATTGGTCTGGAAAAAAACAACTGCAAGAGATTCAACCGCAAAATACAGTGAAACACAAATGTGGAAATCTGAGGGATTTCCCGTGTCACAGTTTTCCCCTTATATTAAAACAACACTCAATGAGATAAGACGGCAATATTTAATACATGCAGCTCTCTGAATACTAACCCTTAAATTATAACAAACAAATATTAATTAAAACAGCAGCAACTACAGTATCTCACAAAAGTGAGTACACCCCTCACATTTCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU489239 True 659 lncRNA 0.34 1 12064379 12065037

Neighbor

gene id symbol gene type direction distance location
CI01000304_11924813_11936040 TRPC4B, TRPC4, TRPC4A coding downstream 128021 11924384 ~ 11936358 (-)
CI01000304_11897314_11913788 POSTN, POSTNA coding downstream 150540 11896479 ~ 11913839 (-)
CI01000304_11850324_11861609 SCAF4, SCAF4A coding downstream 202770 11849777 ~ 11861609 (-)
CI01000304_11845828_11848857 SOD1 coding downstream 215216 11845614 ~ 11849163 (-)
CI01000304_11773915_11805873 TIAM1B, TIAM1 coding downstream 256051 11772846 ~ 11808328 (-)
CI01000304_12076818_12085420 TRIM3B, TRIM3A coding upstream 11518 12076555 ~ 12085420 (-)
CI01000304_12111812_12118998 NA coding upstream 46482 12111519 ~ 12120243 (-)
CI01000304_12123700_12132292 ARFIP2B, ARFIP2 coding upstream 58372 12123409 ~ 12132506 (-)
CI01000304_12166589_12192298 NA coding upstream 100953 12165990 ~ 12192298 (-)
CI01000304_12249076_12249428 NA coding upstream 183529 12248566 ~ 12249722 (-)
G426052 NA non-coding downstream 19818 12043458 ~ 12044561 (-)
G425993 NA non-coding downstream 78684 11985328 ~ 11985695 (-)
G425992 NA non-coding downstream 79464 11984617 ~ 11984915 (-)
G425582 NA non-coding downstream 173146 11890960 ~ 11891233 (-)
G425550 NA non-coding downstream 360999 11701164 ~ 11703380 (-)
G426025 NA non-coding upstream 2991 12068028 ~ 12068400 (-)
G426065 NA non-coding upstream 39407 12104444 ~ 12104665 (-)
G426071 NA non-coding upstream 80018 12145055 ~ 12145359 (-)
G426092 NA non-coding upstream 206751 12271788 ~ 12271991 (-)
G426103 NA non-coding upstream 231519 12296556 ~ 12296831 (-)
G425580 NA other downstream 191473 11868677 ~ 11872906 (-)
CI01000304_11338304_11348212 ILK other downstream 707233 11338019 ~ 11348212 (-)
G424808 NA other downstream 1521714 10444355 ~ 10542665 (-)
CI01000304_10191594_10192287 RNASEKB, RNASEK other downstream 1871484 10190574 ~ 10192357 (-)
CI01000304_10160458_10161768 VAMP2 other downstream 1900049 10160458 ~ 10163762 (-)
G426106 NA other upstream 271664 12336701 ~ 12340228 (-)
CI01000304_12559311_12559998 NA other upstream 493817 12558854 ~ 12560135 (-)
G426147 NA other upstream 630961 12719497 ~ 12805926 (-)
G427057 NA other upstream 1442604 13507641 ~ 13507922 (-)
G427154 NA other upstream 1866754 13931791 ~ 13950548 (-)

Expression


Co-expression Network