G425635


Basic Information

Item Value
gene id G425635
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12111311 ~ 12116366 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU488745
GTACTGATACAGCATGTTCTTTATAAAAAAAAAAAAAAAAAAAAAAAATTGAGGGAAAAACATTTCAATTTACATTTTGATTTAAATTAAATAATTTTAAGTCATCTTGTTCGCTGAGACCCTCCGGTTGACTTGACTGACAACTCTTGTATTACTAGTTCAAGGGCGAAGGCACACACAACAAAGGCTTTAAAGGTGGAATCCACACTTTATTACATAAAAATAAGACAAACTTTAAAAAGACAAAGAACAAAAATAAAATGCATTTCAGTCCCTGAAATTCAGTGTTGTGAATCAATAAAATCAACTTGTTAGAAATAATGCTAAAAACTAATAAAATATCAAGACATCAGCACGCGTCATCAGGTAGTTTTGCATAAGAACACAAAAGACATTAAGAACATTGTAAGACAAGTCCCCAATTGTCTACATTCATCAAATCCTTCATGGCAGCGTAAAATCCTTAAAAATATAAAACTCTGTAAGACATGCCATGTCTTCTTAACCAACAGTTCCTGCCCTGTTTCTTTCCCCAAAGCGTCGAAAGAAAGACACAAGTCCTGAGCTTTCGGGTCTTTTATCTGGAGGAAGCTCCTGTCCATTGCGTCTATGAAAGATCTGTCCCAGTTTGAAGTTAGATGCTTGCTCTTTTTCATCAGTAAGTGATGCAGACCTTATAGGCATCCCGTGTGCTGGAGTTTGCTTTGAAGGACAGTCTGGTAATGAGGATGAAGTCCCCACACCCGATTTATGAGAGAAAGAGGGCTTGTCGCGCACAGGTGTGTCAGGCAACGCCCATACCCCATCATCAAGGATATCCACCCTGGAGAAGGAGAAGGAGTGTCTGCGGTGGGGAGTGTTACTGGGAGAGATACGAGGGCTGAGGATGGTCCACGGTGAGCCTAGACCTCCCATTCCATTCTGCAAGGCCAGATCCACCTCTTTTATGTTCCTCTGTCGAGGAGTAGAGGTGCACATGACGTGGCCTCGGGAACGATCTGGTGTAATGGTTCCATTCAGGCCGCCGCAATCCTGAAAGCGGAAGATTTTGCCGGAGAGCTCGGGCATTTTGTCTGCCTCCTCTGTATTCTCATTGTTCTCCTCTCTTTCTCCTTTATCCATGTCTCCAGTCTCCTCCACTTCTCCTTTATCCACCCCTTCACCTTCAGTCACCACAAACTCTTGTTTGGTAGAGGTGTTGCTACACCCACCTTTTTTATGGTCATTGCATTCAGGAATCAGTCCATCATCAATGCACTGTCCTCTTTTGGATGTGGCACGTGCTCGCTGAACATCATTAACACCGCAGAGTGAAGCCTCCTCCTTCTGGCAGATGTCCTCTGGTTCTTGCACCCTTGAGATCTCAATTTTCTCCTCTTTGGTTTCCGCAGGGCTGTCCAGATGCCCTCCGCCCTCAGGCTCCTCAACCTGAGGGCAGATGTTTTTGATGGGGCTGTCTGTGACAGATCTGTCCCCAACGGGCCTCCTGCGAGAAGGACGCTGGCTAAGGAAACTGGTCAGGACAGATTCTAGAGCGGTGGCTTCATCACTCGCATCCCGATTGGAGCATGTGCCGGTGGATCGGCGCTTAGCCGTTCTGGTCAGCTTTTCTCTTTCTCTCTGCTGTCGCTTGCGAGTCTCAGCCACTTCTCGCTCACGGTTTTCCTGTGTAGCTCTCTCAAACCTCTCACAGAAGGAATGAAAGATAGAGCAACACTCCTCTAGTTTAAATGAGGCTGGGTCTTCACAGAAGTACTCTGCCACTGAGGCACTGATGGTGTCCAGTTCCTGAAGAGAGGCCTCCACGTCTGCAAGCCGAATGTCTGCCAAACAAAGAAATGCTTCCATCTGATGTTGTAAATCGGGCTGTTTACTAGCATCCATCTTTGCTTCCCTAATTTTCTCCAACTCCCTTTGAAGGTCCATCTCCACCTCCTGCTTTTGGATCCTTGCAGCAATTCCAATGTGTTGAAGCTGATCAGGGAAACGCAGCAAAGCTTCATCGATCTGCTGGGCTTGCATGGATACATAGTGCATAAGGTTCATGCCAGGTTTATTTGCTTTGGTGTCCACTAGTTTGAGCAATGATGTCATCCTGAAGCCAATGGCACTACCTGCATAGCCACCTGCATTCATGTAGTTACCAGCCTTCAGCACCAGTCTGATGATTGAATGTAGGTCATCACATGCCAGCAATTCATTAGCAGCAGTTGTCATGACAGCAATGGAGTGCTTGATCTCCTCTATAAAGGGAAAAAACTCTTCTCTGAGGAGCAGGCTCTTTAATCTCACTTTATACCCAGGCACTTGAACCAGCATCACCATGAAACGGTCAGGATCATTTAGCTGAGATAAATCTCCATTGAATGACATCAGCTTCTTTGTCTCCATGTCATCGGGCAACAGCTTGTTGAGTTCCTTCAGTTTCCCGGAAGCAAAGCAGAGGTTCCCGTGCCTGACAGCCTCTACAATGTCCTTCGGTGTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU488745 True 2486 lncRNA 0.46 9 12111311 12116366

Neighbor

gene id symbol gene type direction distance location
CI01000304_12065676_12071391 TRIM47 coding upstream 39881 12064381 ~ 12071430 (+)
CI01000304_11993486_12061098 FREM2, FREM2A coding upstream 49093 11993486 ~ 12062218 (+)
CI01000304_11866424_11868022 UGT5D1 coding upstream 243228 11866100 ~ 11868083 (+)
CI01000304_11812792_11817948 NA coding upstream 292898 11812514 ~ 11818413 (+)
CI01000304_11685224_11691071 NA coding upstream 420240 11685224 ~ 11691071 (+)
CI01000304_12213555_12231910 NA coding downstream 95688 12212054 ~ 12232732 (+)
CI01000304_12314575_12337592 SYNJ1 coding downstream 197950 12314316 ~ 12337690 (+)
CI01000304_12340979_12347664 SLC9A6B coding downstream 223481 12339847 ~ 12347890 (+)
CI01000304_12353305_12359214 FHL1B coding downstream 236640 12353006 ~ 12359838 (+)
CI01000304_12362738_12374610 NA coding downstream 246372 12362738 ~ 12374610 (+)
G425632 NA non-coding upstream 5733 12105340 ~ 12105578 (+)
G425613 NA non-coding upstream 122000 11988857 ~ 11989311 (+)
G425602 NA non-coding upstream 126808 11976798 ~ 11984503 (+)
G425466 NA non-coding upstream 189349 11921662 ~ 11921962 (+)
G425660 NA non-coding downstream 56516 12172882 ~ 12174059 (+)
G425666 NA non-coding downstream 138733 12255099 ~ 12257194 (+)
G425765 NA non-coding downstream 184047 12300413 ~ 12300622 (+)
G425764 NA non-coding downstream 185974 12302340 ~ 12302726 (+)
G425777 NA non-coding downstream 338815 12455181 ~ 12455395 (+)
CI01000304_10555326_10571933 NA other upstream 1555607 10555216 ~ 10572164 (+)
G424251 NA other upstream 1918416 10188822 ~ 10189404 (+)
G424246 NA other upstream 1983989 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 2545738 9561005 ~ 9565778 (+)
G423614 NA other upstream 3161889 8949036 ~ 8949422 (+)
G425718 NA other downstream 312339 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 1440085 13578049 ~ 13595097 (+)
G426312 NA other downstream 2213682 14330048 ~ 14330886 (+)
G426828 NA other downstream 2832524 14948890 ~ 14950592 (+)
G427860 NA other downstream 3769088 15885454 ~ 15889591 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location