Gene
RNA
| Item | Value |
|---|---|
| gene id | G426110 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 12362718 ~ 12363607 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU489291 | True | 890 | lncRNA | 0.42 | 1 | 12362718 | 12363607 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_12305300_12310341 | SLC46A3 | coding | downstream | 52377 | 12303620 ~ 12310341 (-) |
| CI01000304_12254455_12256896 | DCHS1 | coding | downstream | 104607 | 12254112 ~ 12258111 (-) |
| CI01000304_12249076_12249428 | NA | coding | downstream | 112996 | 12248566 ~ 12249722 (-) |
| CI01000304_12166589_12192298 | NA | coding | downstream | 170420 | 12165990 ~ 12192298 (-) |
| CI01000304_12123700_12132292 | ARFIP2B, ARFIP2 | coding | downstream | 230212 | 12123409 ~ 12132506 (-) |
| CI01000304_12409495_12416078 | FGF13.L, FGF13A, FGF13B, FGF13 | coding | upstream | 45290 | 12408897 ~ 12416078 (-) |
| CI01000304_12442703_12460793 | NA | coding | upstream | 79089 | 12442696 ~ 12461728 (-) |
| CI01000304_12552338_12553936 | NA | coding | upstream | 188673 | 12552280 ~ 12553936 (-) |
| CI01000304_12555015_12556002 | MRPL49 | coding | upstream | 191119 | 12554726 ~ 12556002 (-) |
| CI01000304_12558231_12558565 | NA | coding | upstream | 194479 | 12558086 ~ 12558741 (-) |
| G426016 | NA | non-coding | downstream | 46406 | 12313627 ~ 12316312 (-) |
| G426103 | NA | non-coding | downstream | 65887 | 12296556 ~ 12296831 (-) |
| G426092 | NA | non-coding | downstream | 90727 | 12271788 ~ 12271991 (-) |
| G426071 | NA | non-coding | downstream | 217359 | 12145055 ~ 12145359 (-) |
| G426065 | NA | non-coding | downstream | 258053 | 12104444 ~ 12104665 (-) |
| G426113 | NA | non-coding | upstream | 2627 | 12366234 ~ 12366809 (-) |
| G426114 | NA | non-coding | upstream | 3749 | 12367356 ~ 12367911 (-) |
| G426115 | NA | non-coding | upstream | 5734 | 12369341 ~ 12369624 (-) |
| G426116 | NA | non-coding | upstream | 6181 | 12369788 ~ 12370134 (-) |
| G426118 | NA | non-coding | upstream | 8015 | 12371622 ~ 12371853 (-) |
| G426106 | NA | other | downstream | 22490 | 12336701 ~ 12340228 (-) |
| G425580 | NA | other | downstream | 489812 | 11868677 ~ 11872906 (-) |
| CI01000304_11338304_11348212 | ILK | other | downstream | 1005572 | 11338019 ~ 11348212 (-) |
| G424808 | NA | other | downstream | 1820053 | 10444355 ~ 10542665 (-) |
| CI01000304_10191594_10192287 | RNASEKB, RNASEK | other | downstream | 2169823 | 10190574 ~ 10192357 (-) |
| CI01000304_12559311_12559998 | NA | other | upstream | 195247 | 12558854 ~ 12560135 (-) |
| G426147 | NA | other | upstream | 332391 | 12719497 ~ 12805926 (-) |
| G427057 | NA | other | upstream | 1144034 | 13507641 ~ 13507922 (-) |
| G427154 | NA | other | upstream | 1568184 | 13931791 ~ 13950548 (-) |
| G427309 | NA | other | upstream | 1825861 | 14181932 ~ 14237078 (-) |
