G425796


Basic Information

Item Value
gene id G425796
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12561074 ~ 12561425 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU488950
GAGAAGAGAAGATATTGTTGAATAAAGTCGTTATTTTTGTTTTGTTTTTGCTCACAAATGTATTCTCGTTGCTTCATAAAATTAAGGTTGAACCACTGCAGTCACGTGGACTATTTTAATGATGTCTTTAGTACCTTTCTGGACCTTGAAAGTGGTGATTATATTGCTGTCTATGGACGAGACATATACCTCTCGGATTTCATCAAAAATATCTTAATTTGTGTTGTGAAGATGAACGAAGGTTTTACGGATGTGGAATGACATGGTGATGAGTAAATAAATCATTTTTGGGTGAACTAATAATGCAAAGCTGCACACTGATTAAATAAGTAAATAAAACCGCAGGACACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU488950 True 352 lncRNA 0.34 1 12561074 12561425

Neighbor

gene id symbol gene type direction distance location
CI01000304_12556446_12557806 FAUB, UBIM, FAU coding upstream 2998 12556446 ~ 12558076 (+)
CI01000304_12539537_12551905 VPS51 coding upstream 8823 12539329 ~ 12552251 (+)
CI01000304_12496984_12537562 EHBP1L1B, FRMD8 coding upstream 21921 12496879 ~ 12539153 (+)
CI01000304_12489630_12490940 FAM89B coding upstream 69574 12489582 ~ 12491500 (+)
CI01000304_12485748_12487703 SSSCA1 coding upstream 73311 12485748 ~ 12487763 (+)
CI01000304_12569155_12569469 NA coding downstream 7730 12569155 ~ 12569734 (+)
CI01000304_12583384_12588591 WDR74 coding downstream 21959 12583384 ~ 12589788 (+)
CI01000304_12601154_12621980 EHD1B, EHD1 coding downstream 39411 12600836 ~ 12621993 (+)
CI01000304_12653236_12670625 CXADR coding downstream 91412 12652837 ~ 12670983 (+)
CI01000304_12718988_12729338 NA coding downstream 157342 12718767 ~ 12729850 (+)
G425778 NA non-coding upstream 105221 12455493 ~ 12455853 (+)
G425777 NA non-coding upstream 105679 12455181 ~ 12455395 (+)
G425764 NA non-coding upstream 258348 12302340 ~ 12302726 (+)
G425765 NA non-coding upstream 260452 12300413 ~ 12300622 (+)
G425666 NA non-coding upstream 303880 12255099 ~ 12257194 (+)
G425812 NA non-coding downstream 29831 12591256 ~ 12593865 (+)
G425830 NA non-coding downstream 123232 12684657 ~ 12684926 (+)
G425816 NA non-coding downstream 124703 12686128 ~ 12688600 (+)
G425817 NA non-coding downstream 127424 12688849 ~ 12689076 (+)
G425718 NA other upstream 121988 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 2005370 10555216 ~ 10572164 (+)
G424251 NA other upstream 2368179 10188822 ~ 10189404 (+)
G424246 NA other upstream 2433752 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 2995501 9561005 ~ 9565778 (+)
CI01000304_13578347_13595075 NA other downstream 995026 13578049 ~ 13595097 (+)
G426312 NA other downstream 1768623 14330048 ~ 14330886 (+)
G426828 NA other downstream 2387465 14948890 ~ 14950592 (+)
G427860 NA other downstream 3324029 15885454 ~ 15889591 (+)
G428017 NA other downstream 3521805 16083230 ~ 16083714 (+)

Expression


Co-expression Network