Gene
RNA
| Item | Value |
|---|---|
| gene id | G426188 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 12589913 ~ 12590112 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU489395 | True | 200 | lncRNA | 0.39 | 1 | 12589913 | 12590112 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_12570121_12574061 | CNIH2 | coding | downstream | 15852 | 12570059 ~ 12574061 (-) |
| CI01000304_12559311_12559998 | NA | coding | downstream | 29915 | 12558854 ~ 12560135 (-) |
| CI01000304_12558231_12558565 | NA | coding | downstream | 31323 | 12558086 ~ 12558741 (-) |
| CI01000304_12555015_12556002 | MRPL49 | coding | downstream | 33911 | 12554726 ~ 12556002 (-) |
| CI01000304_12552338_12553936 | NA | coding | downstream | 35977 | 12552280 ~ 12553936 (-) |
| CI01000304_12687020_12696284 | AUTS2, AUTS2A | coding | upstream | 96345 | 12686457 ~ 12696284 (-) |
| CI01000304_12887576_12889393 | NA | coding | upstream | 297112 | 12887224 ~ 12889393 (-) |
| CI01000304_12953008_12953457 | NA | coding | upstream | 362592 | 12952704 ~ 12953480 (-) |
| CI01000304_13036242_13039203 | NA | coding | upstream | 444573 | 13034685 ~ 13039315 (-) |
| CI01000304_13068737_13075920 | NA | coding | upstream | 478390 | 13068502 ~ 13075920 (-) |
| G426184 | NA | non-coding | downstream | 693 | 12588923 ~ 12589220 (-) |
| G426142 | NA | non-coding | downstream | 54709 | 12534071 ~ 12535204 (-) |
| G426170 | NA | non-coding | downstream | 94078 | 12495626 ~ 12495835 (-) |
| G426127 | NA | non-coding | downstream | 116182 | 12468037 ~ 12473731 (-) |
| G426135 | NA | non-coding | upstream | 31355 | 12621467 ~ 12625378 (-) |
| G426147 | NA | non-coding | upstream | 105886 | 12719497 ~ 12805926 (-) |
| G427020 | NA | non-coding | upstream | 505311 | 13095423 ~ 13095773 (-) |
| G427023 | NA | non-coding | upstream | 511333 | 13101445 ~ 13101719 (-) |
| G427025 | NA | non-coding | upstream | 514466 | 13104578 ~ 13104792 (-) |
| G426106 | NA | other | downstream | 249685 | 12336701 ~ 12340228 (-) |
| G425580 | NA | other | downstream | 717007 | 11868677 ~ 11872906 (-) |
| CI01000304_11338304_11348212 | ILK | other | downstream | 1232767 | 11338019 ~ 11348212 (-) |
| G424808 | NA | other | downstream | 2047248 | 10444355 ~ 10542665 (-) |
| G427057 | NA | other | upstream | 917529 | 13507641 ~ 13507922 (-) |
| G427154 | NA | other | upstream | 1341679 | 13931791 ~ 13950548 (-) |
| G427309 | NA | other | upstream | 1599356 | 14181932 ~ 14237078 (-) |
| CI01000304_14265881_14269102 | NA | other | upstream | 1678311 | 14265476 ~ 14269571 (-) |
