Item | Value |
---|---|
gene id | G425817 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000304 |
NCBI id | null |
chromosome length | 18613800 |
location | 12688849 ~ 12689076 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU488979 | True | 228 | lncRNA | 0.58 | 1 | 12688849 | 12689076 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000304_12653236_12670625 | CXADR | coding | upstream | 17866 | 12652837 ~ 12670983 (+) |
CI01000304_12601154_12621980 | EHD1B, EHD1 | coding | upstream | 66856 | 12600836 ~ 12621993 (+) |
CI01000304_12583384_12588591 | WDR74 | coding | upstream | 99785 | 12583384 ~ 12589788 (+) |
CI01000304_12569155_12569469 | NA | coding | upstream | 119115 | 12569155 ~ 12569734 (+) |
CI01000304_12556446_12557806 | FAUB, UBIM, FAU | coding | upstream | 130773 | 12556446 ~ 12558076 (+) |
CI01000304_12718988_12729338 | NA | coding | downstream | 29691 | 12718767 ~ 12729850 (+) |
CI01000304_12744525_12773999 | NA | coding | downstream | 54983 | 12744059 ~ 12774312 (+) |
CI01000304_12819247_12825161 | NA | coding | downstream | 128903 | 12817979 ~ 12825313 (+) |
CI01000304_12828251_12839287 | NA | coding | downstream | 138238 | 12827314 ~ 12839991 (+) |
CI01000304_13331382_13338351 | RNFT1 | coding | downstream | 642306 | 13331382 ~ 13339248 (+) |
G425816 | NA | non-coding | upstream | 249 | 12686128 ~ 12688600 (+) |
G425830 | NA | non-coding | upstream | 3923 | 12684657 ~ 12684926 (+) |
G425812 | NA | non-coding | upstream | 94984 | 12591256 ~ 12593865 (+) |
G425796 | NA | non-coding | upstream | 127424 | 12561074 ~ 12561425 (+) |
G425831 | NA | non-coding | downstream | 358 | 12689434 ~ 12689765 (+) |
G425832 | NA | non-coding | downstream | 1353 | 12690429 ~ 12691062 (+) |
G425835 | NA | non-coding | downstream | 4008 | 12693084 ~ 12694418 (+) |
G425834 | NA | non-coding | downstream | 5542 | 12694618 ~ 12694890 (+) |
G425930 | NA | non-coding | downstream | 200255 | 12889331 ~ 13036691 (+) |
G425718 | NA | other | upstream | 249763 | 12436554 ~ 12436605 (+) |
CI01000304_10555326_10571933 | NA | other | upstream | 2133145 | 10555216 ~ 10572164 (+) |
G424251 | NA | other | upstream | 2495954 | 10188822 ~ 10189404 (+) |
G424246 | NA | other | upstream | 2561527 | 10116343 ~ 10127322 (+) |
CI01000304_09564068_09565679 | HRH2B | other | upstream | 3123276 | 9561005 ~ 9565778 (+) |
CI01000304_13578347_13595075 | NA | other | downstream | 867375 | 13578049 ~ 13595097 (+) |
G426312 | NA | other | downstream | 1640972 | 14330048 ~ 14330886 (+) |
G426828 | NA | other | downstream | 2259814 | 14948890 ~ 14950592 (+) |
G427860 | NA | other | downstream | 3196378 | 15885454 ~ 15889591 (+) |
G428017 | NA | other | downstream | 3394154 | 16083230 ~ 16083714 (+) |