Gene
RNA
| Item | Value |
|---|---|
| gene id | G427042 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 13140833 ~ 13141045 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU490313 | True | 213 | lncRNA | 0.51 | 1 | 13140833 | 13141045 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_13068737_13075920 | NA | coding | downstream | 64913 | 13068502 ~ 13075920 (-) |
| CI01000304_13036242_13039203 | NA | coding | downstream | 101630 | 13034685 ~ 13039315 (-) |
| CI01000304_12953008_12953457 | NA | coding | downstream | 187353 | 12952704 ~ 12953480 (-) |
| CI01000304_12887576_12889393 | NA | coding | downstream | 251440 | 12887224 ~ 12889393 (-) |
| CI01000304_12687020_12696284 | AUTS2, AUTS2A | coding | downstream | 444549 | 12686457 ~ 12696284 (-) |
| CI01000304_13185020_13207799 | INTS2 | coding | upstream | 43173 | 13184218 ~ 13207799 (-) |
| CI01000304_13210441_13259571 | MED13, MED13A | coding | upstream | 68683 | 13209728 ~ 13262698 (-) |
| CI01000304_13276793_13278145 | NA | coding | upstream | 135202 | 13276247 ~ 13278145 (-) |
| CI01000304_13342458_13361412 | RPS6KB1A | coding | upstream | 201375 | 13342420 ~ 13361412 (-) |
| CI01000304_13367200_13384209 | NA | coding | upstream | 225502 | 13365346 ~ 13395129 (-) |
| G427025 | NA | non-coding | downstream | 36041 | 13104578 ~ 13104792 (-) |
| G427023 | NA | non-coding | downstream | 39114 | 13101445 ~ 13101719 (-) |
| G427020 | NA | non-coding | downstream | 45060 | 13095423 ~ 13095773 (-) |
| G426147 | NA | non-coding | downstream | 419707 | 12719497 ~ 12805926 (-) |
| G426135 | NA | non-coding | downstream | 515455 | 12621467 ~ 12625378 (-) |
| G426990 | NA | non-coding | upstream | 192292 | 13333337 ~ 13364683 (-) |
| G427009 | NA | non-coding | upstream | 232041 | 13373086 ~ 13373659 (-) |
| G426995 | NA | non-coding | upstream | 238121 | 13379166 ~ 13379942 (-) |
| G426991 | NA | non-coding | upstream | 257335 | 13398380 ~ 13399670 (-) |
| CI01000304_12559311_12559998 | NA | other | downstream | 580698 | 12558854 ~ 12560135 (-) |
| G426106 | NA | other | downstream | 800605 | 12336701 ~ 12340228 (-) |
| G425580 | NA | other | downstream | 1267927 | 11868677 ~ 11872906 (-) |
| CI01000304_11338304_11348212 | ILK | other | downstream | 1783687 | 11338019 ~ 11348212 (-) |
| G427057 | NA | other | upstream | 366596 | 13507641 ~ 13507922 (-) |
| G427154 | NA | other | upstream | 790746 | 13931791 ~ 13950548 (-) |
| G427309 | NA | other | upstream | 1048423 | 14181932 ~ 14237078 (-) |
| CI01000304_14265881_14269102 | NA | other | upstream | 1127378 | 14265476 ~ 14269571 (-) |
| CI01000304_14286960_14294449 | NA | other | upstream | 1142626 | 14286960 ~ 14294449 (-) |
