Gene
RNA
| Item | Value |
|---|---|
| gene id | G427052 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 13502150 ~ 13502415 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU490323 | True | 266 | lncRNA | 0.48 | 1 | 13502150 | 13502415 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_13479162_13481853 | BTG3 | coding | downstream | 19856 | 13478741 ~ 13482294 (-) |
| CI01000304_13444023_13466208 | CLTCB, CLTCA, CLTC | coding | downstream | 35942 | 13444023 ~ 13466208 (-) |
| CI01000304_13406343_13432947 | NA | coding | downstream | 68539 | 13403026 ~ 13433611 (-) |
| CI01000304_13367200_13384209 | NA | coding | downstream | 117612 | 13365346 ~ 13395129 (-) |
| CI01000304_13342458_13361412 | RPS6KB1A | coding | downstream | 140738 | 13342420 ~ 13361412 (-) |
| CI01000304_13517595_13527868 | NA | coding | upstream | 14761 | 13517176 ~ 13527868 (-) |
| CI01000304_13529418_13530787 | NA | coding | upstream | 26715 | 13529130 ~ 13530787 (-) |
| CI01000304_13532811_13534129 | NA | coding | upstream | 30396 | 13532811 ~ 13534129 (-) |
| CI01000304_13541959_13564807 | NA | coding | upstream | 38810 | 13541225 ~ 13564807 (-) |
| CI01000304_13692322_13711234 | ALCAMA | coding | upstream | 189543 | 13691958 ~ 13711234 (-) |
| G427050 | NA | non-coding | downstream | 2886 | 13499032 ~ 13499264 (-) |
| G427049 | NA | non-coding | downstream | 16065 | 13485756 ~ 13486085 (-) |
| G426991 | NA | non-coding | downstream | 102480 | 13398380 ~ 13399670 (-) |
| G426995 | NA | non-coding | downstream | 122208 | 13379166 ~ 13379942 (-) |
| G427055 | NA | non-coding | upstream | 3430 | 13505845 ~ 13506072 (-) |
| G427000 | NA | non-coding | upstream | 7664 | 13510079 ~ 13513826 (-) |
| G427064 | NA | non-coding | upstream | 86732 | 13589147 ~ 13589370 (-) |
| G427076 | NA | non-coding | upstream | 106971 | 13609386 ~ 13609600 (-) |
| G426147 | NA | other | downstream | 462835 | 12719497 ~ 12805926 (-) |
| CI01000304_12559311_12559998 | NA | other | downstream | 942015 | 12558854 ~ 12560135 (-) |
| G426106 | NA | other | downstream | 1161922 | 12336701 ~ 12340228 (-) |
| G425580 | NA | other | downstream | 1629244 | 11868677 ~ 11872906 (-) |
| CI01000304_11338304_11348212 | ILK | other | downstream | 2145004 | 11338019 ~ 11348212 (-) |
| G427057 | NA | other | upstream | 5226 | 13507641 ~ 13507922 (-) |
| G427154 | NA | other | upstream | 429376 | 13931791 ~ 13950548 (-) |
| G427309 | NA | other | upstream | 687053 | 14181932 ~ 14237078 (-) |
| CI01000304_14265881_14269102 | NA | other | upstream | 766008 | 14265476 ~ 14269571 (-) |
| CI01000304_14286960_14294449 | NA | other | upstream | 781256 | 14286960 ~ 14294449 (-) |
