G427077


Basic Information

Item Value
gene id G427077
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13612138 ~ 13613990 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU490359
CTGTGACTGTTCTTCATACATTCTCTCCTTGGCTTCCTTAAAGAGGCGGATTGCTCTTTTGGACTTCTTCATCAGGCTGTCGATGTACACTTTGAAATAGTCATTCTCGCTTAACTGAGTAAGTCTCTGGTTCTCCTCGTATTTGCACAGAATCAGCCTCAGGTGCTGATAAGTGTCAGGTAAAATATCCAGGATGTACGGAGGACTGTTCTTCAGCTGTAGTCTGGGGTTCTGACATAACCTCACTACTTTGTCCATGAGTTTCCATGTCTTCTCTACGGTCCGGCGGTCCGCAGCCGCCTGTTTGGGGGGTCCAACAGCGTCCTGGATGGCATCAATAATGCCTAAAATACGGCCTTTCCTATTGTTAGGTGGGCGTCCACTGAGAGCAGTTGCCATTTTCTGCACATGCGGCAAAAGGAAAACAGTGTAGCTGCCAATACAGGGAATGTCAGAATTCCTGAGTTGAAGCTTTAGGGAGGTCCCCACAACAAATTACAACAAAAGCAACAAAAACACAACGCCAATCCCAGGAAACTGTTACATCTCTGCCCAGATGTTCAAAATCTAGAAGCGGCTCGTCCGTATCCTCAAACAGAAACCGCTTAAACGCAGTACAATCCCGCTTTTCTCGCTGTCTGATATGGTCGTGACACTGCTCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU490359 True 662 lncRNA 0.47 3 13612138 13613990

Neighbor

gene id symbol gene type direction distance location
CI01000304_13541959_13564807 NA coding downstream 47331 13541225 ~ 13564807 (-)
CI01000304_13532811_13534129 NA coding downstream 78009 13532811 ~ 13534129 (-)
CI01000304_13529418_13530787 NA coding downstream 81351 13529130 ~ 13530787 (-)
CI01000304_13517595_13527868 NA coding downstream 84270 13517176 ~ 13527868 (-)
CI01000304_13479162_13481853 BTG3 coding downstream 129844 13478741 ~ 13482294 (-)
CI01000304_13692322_13711234 ALCAMA coding upstream 77968 13691958 ~ 13711234 (-)
CI01000304_13741930_13742220 NA coding upstream 127704 13741694 ~ 13742868 (-)
CI01000304_13903994_13909017 NA coding upstream 289726 13903716 ~ 13909017 (-)
CI01000304_13914502_13920992 ZPLD1 coding upstream 299997 13913987 ~ 13920992 (-)
CI01000304_13979830_13985175 NA coding upstream 365800 13979790 ~ 13985589 (-)
G427076 NA non-coding downstream 2538 13609386 ~ 13609600 (-)
G427064 NA non-coding downstream 22768 13589147 ~ 13589370 (-)
G427000 NA non-coding downstream 98312 13510079 ~ 13513826 (-)
G427055 NA non-coding downstream 106066 13505845 ~ 13506072 (-)
G427130 NA non-coding upstream 167815 13781805 ~ 13782038 (-)
G427136 NA non-coding upstream 190476 13804466 ~ 13804728 (-)
G427144 NA non-coding upstream 255798 13869788 ~ 13870045 (-)
G427154 NA non-coding upstream 317801 13931791 ~ 13950548 (-)
G427155 NA non-coding upstream 343669 13957659 ~ 13959624 (-)
G427057 NA other downstream 104216 13507641 ~ 13507922 (-)
G426147 NA other downstream 572823 12719497 ~ 12805926 (-)
CI01000304_12559311_12559998 NA other downstream 1052003 12558854 ~ 12560135 (-)
G426106 NA other downstream 1271910 12336701 ~ 12340228 (-)
G425580 NA other downstream 1739232 11868677 ~ 11872906 (-)
G427309 NA other upstream 575478 14181932 ~ 14237078 (-)
CI01000304_14265881_14269102 NA other upstream 654433 14265476 ~ 14269571 (-)
CI01000304_14286960_14294449 NA other upstream 669681 14286960 ~ 14294449 (-)
G427423 NA other upstream 747458 14361448 ~ 14361892 (-)

Expression


Co-expression Network