G426377


Basic Information

Item Value
gene id G426377
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13615987 ~ 13618730 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU489603
GTTATTATTAATGCAATGCAATATAGAATTTAGTGCAAAACAATATATTAAAATACAGTCAGTTATTGTAACATGATATATATGATGATATGATGTAGAGTTTTTTTTTATTGAATATAAATATATAAATAAATAATTAAATATAAATATAAATATAAATGTGTGTGTTTCAGGTATACCCTATGTTATCGGGACAAAATGTCACCACAACGATGGCAATATCTGAAATCCTTGTCCTTGTGGGGACATTTTTTTGGGGAAAATGAGGAAAATGGCTTATAAATCATACTAAGTGATTTTTCTTTTTTTTTTTTTTTTCTTTTTTAAATGAAAAAATGCATAAAGTTTTGATGAGTAGGTTTAGGGGTAGGGTTACTGTTTGGGGACAGAATATACAGTTTGTGTATATATATATATATATATATATATATATATATATAAAAAAATGTTTTTGGAAAGTTTCCATAATCATGGAAACCCAACATATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTATCATGTTAATTAATTTATCTTTGTAGTAGGACCAGTGAAAATGTTGGCAGGGCAAGTGAAAGTCTCACTTAGGCCAGCAGAAACATTCCTTATTATTAAGCCCCCCTGAATGAGATGTGCAGAAAGGATAGAAGAGACAGTAAGAGAGGAGGGAACAGGAGAAAGAGGCATGTGGAAAAGCGAGTTCATTCATAGTGCAGTGGGGCTGCGGGGAGACATCAGTACAGAGAGCTGGTCCCCGGCCTGCAGCCAGGCATCTTCGTGGAGGCCCCGCATGTGCTACAGTAATTATACTGGAGCTCCTGAGACCAACAATGGGACTCTCTTTTTCTGTCTTTCTCCCCCAGCACCCTCCTGCCATAAATATCATCTCTGCCATGCAACGTTAGACAGTCTGTGAAAGACTGAATGGTCCCTAAACAACTTAAAATGCCTGTTTGTGATTTTTACACCAGTTTTAGAAGTCTACAAATGCACTAAAAACTTTTTTTAACTTCTTACACACTTTTAAAAACTTTTTTTTAGTTTTAAAGCATTTGATGTCTTTTAATTCCTACCAAAATAATGTCTGTTTTGTTTATATGCCTTGCTTTTTTTAAAGCTATCTTTTTTTTTTTTTTTTTTTAATCTCATTGTTGACCACGTCTGTGTTACTATTTTTTTGTGTTTACATTGTTGCGACAGCTGTGGGCAAGCAACAGCAACAGCAACAGCAACCAAAAAAAAAAAAAAAAATAACAGCCATAAAGCCACTGATGGAACAATGGGAAAAAGGAACCAGGTCTTTCTTTGTTTCATTAACTGCACAATTTTCTAGCTATTATAAAATATAGGCAGGGTGACGAAACAGACACCCTTCTTCAGATTGTGTGCTGTACTCTAGCAATGTCAACCCTGCTTGATAATTATCAGAAGATTGCTGAGGTTCTGAGTTTCTCCTCTTACTGGAAAGATCTAAATGCATTACTATCTATTAGTATTGACATTAAGAGGGCGGACAAAACGGTGGTCTGGAACAGAGATGAATGGGCCGGATGTATTGAATCTAGAGGACATTGGCAAGCTTCACTGTATGTGGGGCTGAGGTGGCAGTCTTAAACCTTGCAGTGTTGGATCTCTCATGCTTTTATCTCCTCAGTGTCTTTTCGGTGACAGAGATGGATGGCATTGTGGAGAGAAGCGTAGAGCCATGCAGTAGACGTGGAACTTCGCTGAATCCTCAGACTTGCCTCATTGACGTGCTTGCTTTTCAGCCATTGTGCATCATGAGAAGATCGGCAGATGTTTTAATGTTCCTGTGGCTTTGAGGTGTGAGAGACTGCTGTCAACAGAGATAGAGACTTCAGATGTAGCGTTCTCAAACTTGCAAAAGAAAATATCTGAGGTTTGGCCTTTAAGCAGGCCACAGAGAGTGGGGACCGTCCAGGGAGCTGTTTTGCATTTGCACTGACTGTGAAATCGCATTGTGTGTTTTAGGGCTTGGTTTAAAAAGTATAGATTTCTCAATTTTAATCGATTTTCATTTTGATGAACCGATATCGATTCTTAAATCCCAAGAATCGATCTTTTAGTCTATGAAACATTCTCAGCTTTAAAATTCTGTAAACTATATTATGAAGTTCAAACAGCAAATACCATTTTGAACACTCTGACACATTTATATGTGAGCTCTCAACCAGTGATGCACTGGAGCAACGCAAGGACCACCTCCCTCATTTCCATGTTGCACACAGAAAAGTATAAATAAATAAATGTATAAATAAATATGTAAAATAGAGACGGTGCTTAAATTTCTTAAACCACCACCCATTGTAAGGTTTGTGCCACAGCTGCCCTAAACTATTTTTTTACCAAAATCATTTTTTATGTTTCTGTAATGGTTAATCCACACAAGTATGTGTAAGCTCTTTAGTCACAGTAGTGTTTCTAATGCTAAAATATAATTGTTGGGATTTATTGGATTCAAAGATAGATCGCACAAATGTTTTTGGGAACAACTAGAAACTATTTGGAAGTCAATAACAACAGAGACTGTGGAAAAGTACATAAAAACAATGCCAGCAAGCTGTTATCAAGGCCAAAGGAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU489603 True 2607 lncRNA 0.37 2 13615987 13618730

Neighbor

gene id symbol gene type direction distance location
CI01000304_13578347_13595075 NA coding upstream 20890 13578049 ~ 13595097 (+)
CI01000304_13435609_13438459 PTRH2 coding upstream 177257 13435507 ~ 13438730 (+)
CI01000304_13331382_13338351 RNFT1 coding upstream 276739 13331382 ~ 13339248 (+)
CI01000304_12828251_12839287 NA coding upstream 775996 12827314 ~ 12839991 (+)
CI01000304_12819247_12825161 NA coding upstream 790674 12817979 ~ 12825313 (+)
CI01000304_13731299_13731640 NA coding downstream 112512 13731242 ~ 13731650 (+)
CI01000304_13744571_13748279 NA coding downstream 124945 13743675 ~ 13748318 (+)
CI01000304_13932457_13932762 NA coding downstream 313219 13931949 ~ 13933084 (+)
CI01000304_13947668_13967998 PICALMA, PICALM, PICA coding downstream 327428 13946158 ~ 13969190 (+)
CI01000304_13989055_14004354 SYTL2A coding downstream 370325 13989055 ~ 14004526 (+)
G426518 NA non-coding upstream 34944 13580837 ~ 13581043 (+)
G426512 NA non-coding upstream 40961 13574511 ~ 13575026 (+)
G426380 NA non-coding upstream 65904 13546562 ~ 13550083 (+)
G426360 NA non-coding upstream 82906 13519424 ~ 13533081 (+)
G426369 NA non-coding upstream 90049 13519885 ~ 13525938 (+)
G426348 NA non-coding downstream 61895 13680625 ~ 13689596 (+)
G426526 NA non-coding downstream 120970 13739700 ~ 13741560 (+)
G426592 NA non-coding downstream 254175 13872905 ~ 13873118 (+)
G426307 NA non-coding downstream 358235 13976965 ~ 13978162 (+)
G426362 NA non-coding downstream 433018 14051748 ~ 14062044 (+)
G425718 NA other upstream 1176901 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 3060283 10555216 ~ 10572164 (+)
G424251 NA other upstream 3423092 10188822 ~ 10189404 (+)
G424246 NA other upstream 3488665 10116343 ~ 10127322 (+)
G426312 NA other downstream 711318 14330048 ~ 14330886 (+)
G426828 NA other downstream 1330160 14948890 ~ 14950592 (+)
G427860 NA other downstream 2266724 15885454 ~ 15889591 (+)
G428017 NA other downstream 2464500 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 2886132 16504764 ~ 16513625 (+)

Expression


Co-expression Network