G426307


Basic Information

Item Value
gene id G426307
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13976965 ~ 13978162 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU489532
GGACACGCGCTCATTTTGTAATTTGTCTAACGCGGTTATTGTACCGCTCTGTGTCTGTAACGAAACACAAGGGTGTTGAGAGAGCGTGAGTGCAGGAATGTAGTGGGTTTTCACACAAACATGGCTTCACTTTTTTCCATGAAATGGCAAACCGAGGGATCGGGATTTGGGTGGAGTTCTGTCTTTATCCGATCATCAATCAAGCAATACCTGATTTAACCTTCTCCAATTCGAAATTCTAACATTGGTTTCTATTATTTCTATTTTATTTTTATTTTTTATGTTATGACATTTGCAGTAGACATTCCTTGTGTATTGTCTGTATTTATTTATGATTTACCCACTGAGGACATGAAAGAAATGAATAATCTTTTTTTTTTTTTTTTTTTTTTTCTTTTGAGCTCTTCCTTACGGAGGTGTTTCGAATTATGCATTCATATGGGTATGATTGGTTGTATAATTCGGATTTGAATGACTGAATTATGAAAAAATATATATATAATATAAAAAATGGGGGGAAATGGACACTTATAAACTGACTGATACAGCACTAAGTATTCTCAGAAGCAGTTGTATGTCTAGTGCAATTTCTTTGTTGCTCAAACGCTCACCGCCCTTCATTTGTAATGGACATAGGATAAAATATACAAAAAATCGTTATTCCACATAGTCAGTTCTGTGCCCCGGGTGGGGGTGGGGGTGGGTTTCGTGAGGGAGCATTTAGCAAAGCACTACATTTGTGATTCAGCGGCATTGCATTTGGGGAAGATCTGTATTGCTTTCTGCTTGGCATGTCATTTTTACATTTGACAGTTATATGGCTGCCTTTTCAACCTGAATGTGCAGAGTCGCCTTCGTTTTCGGGCCATCCAAGAGCAGTTGCGTGTGTGTTTGTGGGTGTGAGTGTGTAAATGTGAGTGAGAATCGCAGGTTGCTGTCGGCATCGGATTGGGTCGGTAGTGTCTAGCTGTAGGTCCAGTAGAGTGAAGAAAGGGGGCGCTGTTGATCAGTGCTCCATGTACATAAAACAGGCCCTGTCCAGTAGGGAAATACACAAAGGGTGGTCCGAATATGAGGGCGATTCTATCCATTGATTTAGCATATTTACTGCATCATCCCTGCAGATTCTATTTTGTTTATGACAAAAAAATGAAGCAGAATTTGGGTGGTTTTCAAATAAAGTGCATCTTCCACAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU489532 True 1198 lncRNA 0.40 1 13976965 13978162

Neighbor

gene id symbol gene type direction distance location
CI01000304_13947668_13967998 PICALMA, PICALM, PICA coding upstream 7775 13946158 ~ 13969190 (+)
CI01000304_13932457_13932762 NA coding upstream 43881 13931949 ~ 13933084 (+)
CI01000304_13744571_13748279 NA coding upstream 228647 13743675 ~ 13748318 (+)
CI01000304_13731299_13731640 NA coding upstream 245315 13731242 ~ 13731650 (+)
CI01000304_13613026_13686604 CBLB coding upstream 290361 13613026 ~ 13686604 (+)
CI01000304_13989055_14004354 SYTL2A coding downstream 10893 13989055 ~ 14004526 (+)
CI01000304_14005720_14006514 CREBZF coding downstream 27558 14005720 ~ 14006860 (+)
CI01000304_14011581_14044797 NA coding downstream 33164 14011326 ~ 14044960 (+)
CI01000304_14108490_14112755 NA coding downstream 130328 14108490 ~ 14113061 (+)
CI01000304_14131633_14155156 NA coding downstream 152677 14125318 ~ 14155278 (+)
G426592 NA non-coding upstream 103847 13872905 ~ 13873118 (+)
G426526 NA non-coding upstream 235405 13739700 ~ 13741560 (+)
G426348 NA non-coding upstream 287369 13680625 ~ 13689596 (+)
G426377 NA non-coding upstream 358235 13615987 ~ 13618730 (+)
G426518 NA non-coding upstream 395922 13580837 ~ 13581043 (+)
G426362 NA non-coding downstream 73586 14051748 ~ 14062044 (+)
G426375 NA non-coding downstream 106876 14085038 ~ 14095622 (+)
G426352 NA non-coding downstream 137587 14115749 ~ 14123481 (+)
G426343 NA non-coding downstream 257715 14235877 ~ 14241431 (+)
CI01000304_13578347_13595075 NA other upstream 398118 13578049 ~ 13595097 (+)
G425718 NA other upstream 1537879 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 3421261 10555216 ~ 10572164 (+)
G424251 NA other upstream 3784070 10188822 ~ 10189404 (+)
G424246 NA other upstream 3849643 10116343 ~ 10127322 (+)
G426312 NA other downstream 351886 14330048 ~ 14330886 (+)
G426828 NA other downstream 970728 14948890 ~ 14950592 (+)
G427860 NA other downstream 1907292 15885454 ~ 15889591 (+)
G428017 NA other downstream 2105068 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 2526700 16504764 ~ 16513625 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G11626 NA non-coding NC_053112.1 CM020909.1 41850612 ~ 41855305 (+)