G427423


Basic Information

Item Value
gene id G427423
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 14361448 ~ 14361892 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU490815
CTGCTGATGAGCCTTCAGGTAAGACCCCTGCTTGTGTATGTTGATACCAAGAGTTGCTTTGTTACGCTCCACAATGTCTTCCTTAGCTCTAACTGGCCTTGGATCAGAAATATATCGAGAGCTTCTCTTCTGGGGAGAAACTGATTTGACATTCAGGTGCTCTCCATCATCCCGTGGCGTGCCTTCAGAAGACATGCAAGAACTTTTTGATTCGGGGGGATTGGGAGGGTCTTCCTGTTGTGGGTGCAGGTGGAAAGGAGATGAAGGTGGATGGGATGAAGCATTTTCCATCTGAACTGTAGGTGGATTACTGACAATGACATAATCTTGTCTGCTACCTAGAGCCGTGCTCTCTAAAGGTTCAAGACTATCTTCAGACTCCTCAAACGAGTCGAGAGAAAGTCTCCCATTTAGCTGGTTGAGAAACTGACCCCCTTCCTGATTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU490815 True 445 TUCP 0.47 1 14361448 14361892

Neighbor

gene id symbol gene type direction distance location
CI01000304_14333374_14339329 ZPR1 coding downstream 21330 14333182 ~ 14340118 (-)
CI01000304_14330462_14330842 NA coding downstream 30556 14330079 ~ 14330892 (-)
CI01000304_14318806_14323940 NA coding downstream 36666 14318639 ~ 14324782 (-)
CI01000304_14296254_14303852 VPS11 coding downstream 57566 14295795 ~ 14303882 (-)
CI01000304_14286960_14294449 NA coding downstream 66999 14286960 ~ 14294449 (-)
CI01000304_14377465_14379055 BSX coding upstream 14640 14376532 ~ 14379055 (-)
CI01000304_14381274_14385770 LIM2.1 coding upstream 19106 14380998 ~ 14385770 (-)
CI01000304_14753489_14803322 OPCML coding upstream 391597 14753489 ~ 14803322 (-)
CI01000304_14834446_14835469 NA coding upstream 472522 14834414 ~ 14835549 (-)
CI01000304_14949765_14955677 PANX3 coding upstream 587295 14949187 ~ 14955677 (-)
G427342 NA non-coding downstream 5638 14351932 ~ 14355810 (-)
G427341 NA non-coding downstream 29048 14331073 ~ 14332400 (-)
G427345 NA non-coding downstream 43405 14305217 ~ 14318043 (-)
G427309 NA non-coding downstream 124370 14181932 ~ 14237078 (-)
G427318 NA non-coding downstream 158457 14202337 ~ 14202991 (-)
G427424 NA non-coding upstream 2129 14364021 ~ 14364315 (-)
G427434 NA non-coding upstream 33652 14395544 ~ 14395824 (-)
G427570 NA non-coding upstream 381090 14742982 ~ 14743303 (-)
G427574 NA non-coding upstream 481685 14843577 ~ 14843800 (-)
G427575 NA non-coding upstream 482153 14844045 ~ 14844379 (-)
CI01000304_14265881_14269102 NA other downstream 91877 14265476 ~ 14269571 (-)
G427154 NA other downstream 410900 13931791 ~ 13950548 (-)
G427057 NA other downstream 853526 13507641 ~ 13507922 (-)
G427376 NA other upstream 897072 15258964 ~ 15261405 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 2417472 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 2492673 16854565 ~ 16860911 (-)
G429331 NA other upstream 3561971 17923863 ~ 17924684 (-)
G429499 NA other upstream 3875827 18237719 ~ 18238319 (-)

Expression


Co-expression Network