Gene
RNA
| Item | Value |
|---|---|
| gene id | G426828 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 14948890 ~ 14950592 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU490061 | True | 1166 | TUCP | 0.48 | 2 | 14948890 | 14950592 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_14695603_14740389 | NTM | coding | upstream | 207811 | 14695603 ~ 14741079 (+) |
| CI01000304_14356867_14373980 | NA | coding | upstream | 574224 | 14356586 ~ 14374666 (+) |
| CI01000304_14352375_14355516 | HSP70, HSP7C, HSPA8, HSPA1L.S | coding | upstream | 593374 | 14352375 ~ 14355516 (+) |
| CI01000304_14331169_14331855 | HIST1H2AD.L, HIST2H2AB, H2AFX.L, HIST1H2AH, HIST1H2AJ | coding | upstream | 616917 | 14331064 ~ 14331973 (+) |
| CI01000304_14304022_14317252 | HYOU1 | coding | upstream | 630865 | 14304022 ~ 14318025 (+) |
| CI01000304_15034188_15038152 | TMEM218 | coding | downstream | 81625 | 15032081 ~ 15038498 (+) |
| CI01000304_15040739_15045239 | NA | coding | downstream | 89960 | 15040552 ~ 15045257 (+) |
| CI01000304_15047768_15063987 | ROBO4 | coding | downstream | 97176 | 15047768 ~ 15064170 (+) |
| CI01000304_15140709_15147357 | NA | coding | downstream | 189969 | 15140561 ~ 15147557 (+) |
| CI01000304_15148523_15151340 | NA | coding | downstream | 197242 | 15147834 ~ 15151395 (+) |
| G426853 | NA | non-coding | upstream | 5030 | 14943644 ~ 14943860 (+) |
| G426851 | NA | non-coding | upstream | 6676 | 14941924 ~ 14942214 (+) |
| G426834 | NA | non-coding | upstream | 16963 | 14931691 ~ 14931927 (+) |
| G426833 | NA | non-coding | upstream | 18097 | 14930508 ~ 14930793 (+) |
| G426825 | NA | non-coding | upstream | 40394 | 14908128 ~ 14908496 (+) |
| G426920 | NA | non-coding | downstream | 199250 | 15149842 ~ 15150398 (+) |
| G426923 | NA | non-coding | downstream | 224687 | 15175279 ~ 15175635 (+) |
| G426928 | NA | non-coding | downstream | 243717 | 15194309 ~ 15194689 (+) |
| G426929 | NA | non-coding | downstream | 249272 | 15199864 ~ 15200129 (+) |
| G426312 | NA | other | upstream | 618004 | 14330048 ~ 14330886 (+) |
| CI01000304_13578347_13595075 | NA | other | upstream | 1370043 | 13578049 ~ 13595097 (+) |
| G425718 | NA | other | upstream | 2509804 | 12436554 ~ 12436605 (+) |
| CI01000304_10555326_10571933 | NA | other | upstream | 4393186 | 10555216 ~ 10572164 (+) |
| G424251 | NA | other | upstream | 4755995 | 10188822 ~ 10189404 (+) |
| G427860 | NA | other | downstream | 934862 | 15885454 ~ 15889591 (+) |
| G428017 | NA | other | downstream | 1132638 | 16083230 ~ 16083714 (+) |
| CI01000304_16505174_16506124 | NA | other | downstream | 1554270 | 16504764 ~ 16513625 (+) |
| CI01000304_16761621_16764983 | EXOSC8 | other | downstream | 1805354 | 16761372 ~ 16765057 (+) |
| CI01000304_17009769_17023302 | ZDHHC20, ZDHHC20A | other | downstream | 2060138 | 17009769 ~ 17023882 (+) |
