G427376


Basic Information

Item Value
gene id G427376
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15258964 ~ 15261405 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU490768
GACAATTTTCATTTTTGGGTGAACTAACCCTTTAAACTCATATGTATTATTTTTAATTTTTTTTTTTTTTTCTTCACAGGTACCAAAGTTCAGTCAGGCAGTGGAATCGCTTTGGAGTTTTTTGAAGGGCAGCTCTGAAAGAGAGGCGATTCTCAGGTTCAACGATTTGCCAACCCAACAATACACTCCTCACAACAACACAATGTTCTGCTAAAGGGAGTGACGTCACAGCTTTTTAAGGTGTGCCTGGAATTGACTGCCGTTTCAAATGCTTTACTATCATTCCGGCCCCCAAAAATCCCAAAATCATTGGACTTAATCACTACAGACCTGTTGCTCTCACATCTGTGTTCATGTAGTCATTTGAGAGACTGGTGTTGGCCTTCCTGAGAGACATCACTGGAACCTTGCTGGATCCTCTTCAGTTTCCCTACAGAGCAAACAGGTCTGTGGATAATGCAGTCAACATGGGACTGCATTATATCTTGCAAGTTGCAACATCTCGACAGACCTGGGACTTACGCAAGGATCTTATTTTCGGACTTCAGTTTGGCTTTCATCACCATCAGACCAGATCTTCTATCATACAAACTGACCCAGCTTTTTATGCCCACCCCAATCTGTCAGTGGATCACCAGCTTTCTGACCGGTAGGCAGCAGCTAGTGAGTCTGGGGAAAATCACATCCAGGACTCTCACTATCAGCACTGGTGCTCCTCAGGTTTACATCCTCTCCCCACTGCTCTTCTCCCTGTACAAATGAATGCACCTCTAAAGACCCCTCTGTCAAGCTCCTGACGTTTGCAGACGACACCACAGTCATCGGCCTCATCCAGGATGGTGATGAGTCTGCATACAGACAAGAAGTTGAGCAGCTGGCTGTCTGGTGCAGTCATAACTGCCTGGAGCTTAACATGCTCAAAACAGTGGAGATGATTGTGGACTTCAGAATCATCATGAACACCATCTCTCAAGACCTGATTTGGGACAATCACATTGTGAAAAAGGTCCAGCAGAGGTTGTACTTTCTTCGCCAGCTGAGGAAGTTCAACCTGCCACAGGAGCTGCTGACACAGTTCTTCTCACCCGTCATTGAGTCTGTCCTGTGTTCATCTATAACTGTCTGGTTTGGTTCAGCCACCAAATTAGACATCAGGAGACTACAACGGACACTTCGGAATGCTGAGAGGATTATTGGTGCTCTTCTTCCCACCCTCCAGGACCTGTACTCTTCCAGAGTAAGGAAAATTAAAATCATCACAGAAACAGTTTCTTCCCACAGGCTATTTCCCTCTTGAACAGTTAAATGCCATCCAAGAGCAATACCCCACTTTTTTGTGCAATATCCTTGTAAATTCATTTAGTCCTATTTAGTCCGGTTCATTTGGTCCTGTTATATTTATGTGTGTGCACTAGAAGCTTCAATACCAAGGTAAATTCCTTGTGTGTGCAAGCACACTTTGCAATCTTTAATAAAAACAGGACAGACCACTCATTACCCTGCATGAGCCAATCAGCACTGTCCCTGGACACAAACACTTCCAAAAAAAAAAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU490768 True 1555 TUCP 0.44 2 15258964 15261405

Neighbor

gene id symbol gene type direction distance location
CI01000304_15132805_15136196 ROBO3, ROBO2 coding downstream 122768 15132227 ~ 15136196 (-)
CI01000304_15075003_15110723 ROBO3 coding downstream 147968 15074301 ~ 15110996 (-)
CI01000304_14957226_14983228 PKNOX2 coding downstream 275736 14956603 ~ 14983228 (-)
CI01000304_14949765_14955677 PANX3 coding downstream 303287 14949187 ~ 14955677 (-)
CI01000304_14834446_14835469 NA coding downstream 423415 14834414 ~ 14835549 (-)
CI01000304_15322368_15331609 FEZ1 coding upstream 60385 15321790 ~ 15331739 (-)
CI01000304_15341701_15346353 VPS26BL, V26BL, VPS26B, V26BB coding upstream 79160 15340565 ~ 15347178 (-)
CI01000304_15584327_15694046 UVRAG coding upstream 322922 15584327 ~ 15694046 (-)
CI01000304_15703390_15711806 DGAT2 coding upstream 441767 15703172 ~ 15712119 (-)
CI01000304_15715861_15722546 MOGAT2 coding upstream 454019 15715424 ~ 15722546 (-)
G427632 NA non-coding downstream 55463 15203264 ~ 15203501 (-)
G427631 NA non-coding downstream 64305 15194276 ~ 15194659 (-)
G427588 NA non-coding downstream 343293 14915463 ~ 14915671 (-)
G427583 NA non-coding downstream 397096 14861400 ~ 14861868 (-)
G427579 NA non-coding downstream 401721 14856975 ~ 14857243 (-)
G427657 NA non-coding upstream 13811 15275216 ~ 15275669 (-)
G428340 NA non-coding upstream 204520 15465925 ~ 15466511 (-)
G428376 NA non-coding upstream 225974 15487379 ~ 15487595 (-)
G428377 NA non-coding upstream 226522 15487927 ~ 15488140 (-)
G428378 NA non-coding upstream 227052 15488457 ~ 15488714 (-)
G427423 NA other downstream 897072 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 971360 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 989393 14265476 ~ 14269571 (-)
G427309 NA other downstream 1050665 14181932 ~ 14237078 (-)
G427154 NA other downstream 1308416 13931791 ~ 13950548 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 1517959 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 1593160 16854565 ~ 16860911 (-)
G429331 NA other upstream 2662458 17923863 ~ 17924684 (-)
G429499 NA other upstream 2976314 18237719 ~ 18238319 (-)
G429673 NA other upstream 3325037 18586442 ~ 18591856 (-)

Expression


Co-expression Network