G428383


Basic Information

Item Value
gene id G428383
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15498415 ~ 15503512 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU491883
CCCACTTCGCTATTATGAAGATGCATCAGCTTGTTGGCATGTGAGCCAGACTTCTTCTTCATCTTCATGGGGGCATCAGAAAACTTGGAGCCCATGAGGAGACCATAATGCAGGTTATCAGCACAGCCGCCCCACCTGTACCCAGGCTCGGGTATTTCCCCTGGAATTGGACCACACGAGCACAACCTCAGATCTCCGGAGGTGCACGCCCGTGCTATAGTGTGACTTATAGCAGCTGCAGAGAGGGCGTATACAAATGCAGACTCCCTCGTTCCTCGTTCCAGGTCCGGGAGGAATTTTTGAGCTTCAATAGAGGAACAGTTCCAGCGCATGTCTGAGAAGGTCTTTTGGCAGACCTTTTTAACCTCCCGTGCTGCTTGGATGATAGTTTGCATGAGTTCCAGGTTACTCCTACAGAGCTGAGCCTGAGAGGAGACGAGGCCTGGCAACATCTTGCAGTGCTGGGTCTTGTTGATGTGTTGTGTGGTCTGTGATAGTGCCAGCCATTTGATTCCTGTGCACTGCTGAGACAGGAGCAGGAATGTGAGAAGACAGAGCGGGAGAGAAGGGAAGATTCGCTTCATGCTGTACAATAAGATCCAGCTCGATCAGAAGACACTGATGCAGGTGCTCGCTGACCCCACTGCTTCTTGACACAGTTATAATTAAAAGCCAAAAGCCATGGCACTTATTCCTTCTTTCTGTCCCTCTCCTTTATCAAACGGAGGCTGACGTCAAAAAAATGCCGATTGTGCAAATAATCCAAAAGTGCGTTTTATTTAAATCCAGCCAAACTTCTCTAGTTAATCCGTTTTTGTGAAGTCCGAATGAGAAAGCATCATGCAAAAGTCCAATGATAAAGAGATGTGTGTTGATCTGCTGTGCAGTGCTGCTCGCGCGCTGGAATCTGCTGGACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU491883 True 918 lncRNA 0.49 4 15498415 15503512

Neighbor

gene id symbol gene type direction distance location
CI01000304_15341701_15346353 VPS26BL, V26BL, VPS26B, V26BB coding downstream 151237 15340565 ~ 15347178 (-)
CI01000304_15322368_15331609 FEZ1 coding downstream 166676 15321790 ~ 15331739 (-)
CI01000304_15132805_15136196 ROBO3, ROBO2 coding downstream 362219 15132227 ~ 15136196 (-)
CI01000304_15075003_15110723 ROBO3 coding downstream 387419 15074301 ~ 15110996 (-)
CI01000304_14957226_14983228 PKNOX2 coding downstream 515187 14956603 ~ 14983228 (-)
CI01000304_15584327_15694046 UVRAG coding upstream 80815 15584327 ~ 15694046 (-)
CI01000304_15703390_15711806 DGAT2 coding upstream 199660 15703172 ~ 15712119 (-)
CI01000304_15715861_15722546 MOGAT2 coding upstream 211912 15715424 ~ 15722546 (-)
CI01000304_15755554_15770449 NA coding upstream 250964 15754452 ~ 15770768 (-)
CI01000304_15782838_15784193 ATG101, ATG101.L coding upstream 279215 15782727 ~ 15784193 (-)
G428379 NA non-coding downstream 8401 15489809 ~ 15490014 (-)
G428378 NA non-coding downstream 9701 15488457 ~ 15488714 (-)
G428377 NA non-coding downstream 10275 15487927 ~ 15488140 (-)
G428376 NA non-coding downstream 10820 15487379 ~ 15487595 (-)
G428340 NA non-coding downstream 31904 15465925 ~ 15466511 (-)
G428382 NA non-coding upstream 1242 15504754 ~ 15510980 (-)
G428385 NA non-coding upstream 12951 15516463 ~ 15516690 (-)
G428432 NA non-coding upstream 70220 15573732 ~ 15574033 (-)
G428450 NA non-coding upstream 246072 15749584 ~ 15750897 (-)
G428451 NA non-coding upstream 247831 15751343 ~ 15751543 (-)
G427376 NA other downstream 237010 15258964 ~ 15261405 (-)
G427423 NA other downstream 1136523 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 1210811 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 1228844 14265476 ~ 14269571 (-)
G427309 NA other downstream 1290116 14181932 ~ 14237078 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 1275852 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 1351053 16854565 ~ 16860911 (-)
G429331 NA other upstream 2420351 17923863 ~ 17924684 (-)
G429499 NA other upstream 2734207 18237719 ~ 18238319 (-)
G429673 NA other upstream 3082930 18586442 ~ 18591856 (-)

Expression


Co-expression Network