G428411


Basic Information

Item Value
gene id G428411
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15800929 ~ 15806758 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU491925
GCAGAATAGAAGATTAAAGAAAAATGATCTACATTTTAATAGGAGTAAACATTTAAATATCTAAATACTGACCAGTAAATGTCCAACATTAGCCAATAATGAATTTTTTTTTTTTTTTTTGTTGATATATCATTCATCCCTAAAACCTAAAATAAATATATATAGTATAGTATTTGTAGTATATCTATATATAATATTATATCAAGGATACAGTAATATTATATTTTATGATAAAAAATAGTGTCAACTGAGTGGCGCAGTCTGTTAAGACACCTGCCCTTTCAGGTTGTGGGTTTGAATCCTGTTTGGCACATGAGGTACTGTGGCCAGAAATGTTGCAAAAAGTTGCATCTGTTCCAGACATTGATTCTTTCTAAGAATTATCTGATCTGAACTTATTAATTATAACATGCAGTGCAATTTTTGTCTTCACAGTGGCGCAACGAGGTGAGTGACAGGCACCTGACCCAGAGATTGTGGGTTCGAGTCTCATGGTACAACTTTATTGGGGCAGTTGTGGCCTAATGGTTAGAGAGTCAGGCTGGTATCGCGAAGGTTGCGGGTGCTGAGGGTGACTGAGGTGCCCTTGAGCAAGGTACCTAACCCCCAATCGCTGCCCGGCGCCACAGCAAAATGGCTGCCCACTGCTCTGGGTGTGCGTGTGCACAGTTTGCAGTGTGTGTGTTCACTACTCACTACTCCTAATGTGTGTACACTAAATGGATGGGTTAAATGCAGAGGAAAAATTCTGAGTATGGGTTACCATACTTTGCCTTAACGTCACTTTCACTTTCAATAAATGACTGATATTATGAATTTATACTACTTGGTTAATAAAAATATTAAAGTACACCAAAACTTAAAATATTTTAAGTGAATTTAGGCATCAGAATATAATGTACAGAATGAAAGATTTTATGCACAAACACACAAAGTTCTGCTATAGTCACTTGTGCACAGCAACTAATGCCAAAACATGCTCTTAAAGGGAAAGCAATCTTTAAAAGATTTTAAAGCTCTTAAAGGGTTAAACTTTTGTATGATAAGGTACACTATGTAACATTTTTTGTTCAAAATTAGTCAATACATCATCAATTCTTCTTCCAAAACTTGTTTCTGTCTTACTCTCATTCACTATAGTAAGCCTATTATAAGTGTGTATATTTTAGACCTGACAGGGTGGTTCTCAGGTGAAATTGTGTACATACGTCATATTTGTAAATAGAGAAAAGTTGCTCTGGCTAATTTGATTTGTGTATGGTGTGGAAGTGGCATAGTTTAGTTGTCACAATGAGCGAGAAAAGTTGACATGGTGAAGCACACTAAATCTCGAACCTCCAGAGAACCACCTTTTCTAAAAAAACACAGAATGGAGGAGGGTCTGCTGGCAAAAAGAGAATGCGACAGCTCGTAATAAAACAAGAATCAACATTGGCTTGGCTTTTCAAGGTGTACCTTTAAGTTAGTGCTATATGATGGCAAAATGGCAGAAACAATTAAATATTCTATATTGGTCAATAGCAATACATTCAAAATAAAAAAATAAGATAATATATGCAAGCTGCTGATACAGGTGCTTTTTTGTTTGTGATGGATGAACGAAAGCTTGTTGACAAGAAAAATCCAAGAAAACACACGTATTATAGCGCATTACACTAACCCCAATCCAGAAAGACATTTCAGTGGCAGATGTGAAATGACATGCACTTTTAAGTCAATATGAAACCAAATCTTATTTACTTTCTTCAAAAACATATGCCTGATCTTATAGAGTGCTGCAGCGATTATGTATTTTTGTAGGCCAACCCGGAAGTTAGCATCACACTAGTTACCTAAACAAAAACCCAATAAGATTTTTCTATAGGCTTTTGATTATTGCAAAAAAAATAAGTTTTGTGATCAACAAAAATTGATGATACACTTTCACTGTAAAGATTTGGAATAACTGTTCTTCTGCAGCTCCTGTAAGTTACGGGGTACCTCAGGGCTCTATTTTAGGGCCGTTGCTTTTTTTCTCTATACATGATTCCACTGGGCTCTATATTTAATAAATTAGGCATTTCATATCATAATTAAGCTGATTACATGCAGTTGTACCTGCCTTTCAAAGCAGGAAATAATGCAGCTGAAAATTCTTTGCTGTATTGCCTTGAGGAGGTGAAATGTTGGATGAACTCAAATTTTTTATTGTTAAATGATAAAAAGACTGAAATTTCATGTTGACTTTGAAACAAGTCCATGGTATCTTTTGTGTTCAAAATGCTTATAGCTTACAATTTTATGTACACAAAATAATTTAAACAAAATAAATTAATTGAATACTTCAATTCCGTTCATACAAAACATGTTCTTGCGCTATTTTTCATTTATATACACATGCAGATGGACATCTCTGGCACATTCGTACACTGTCTCCTTTGAGATAGAGCACCCTGATCTCTGAACAGTGAAAAAAAGACAAGACAATCTGGTCTTTGGCTCTCTCTTATCCACTCCTGACCTCCCAAGAGGCACATTTAGAGAAAAACGAAAAAGAGAGAAGACCTTAAGCCGAGTCCTAATTAATATCTGGCCCAGAAAACATCATTCACGGAAGTGCAAATAACGGATATGGATGCCAGTGGTGGTTTATAAGTAATGACTTGTGAATCCTTGAGGAGCATCTCTCTCCCTCTCTCTCTCTCTCTTATTGGCCACTGCTGTCAGCCTTGTTTGTCCCAGTGCAGTTCTAAATTTGTCCATATAGACTGTCGAAGCGGAGGCCAGTTCATTCTGCCGTCAGCTGAAATGAAAACAAGCTGAGGGGAGCCACACTCGCTTCTCTTAACTGTCAGGTCTGATCACAGTGGAGATGAACACACAGTCATAGAGGCCTAGGGGAGGCAATGAGCTGGATTGATTTATTGATCAAATATTCCTCACTGTGTTTTGTGGTTTCAGCTGCAAGCTATAACTCAGAAAATGAAATTCAATTACAGGGAATAGGAGAGCCGCAGGGGTTTAAAAACATTGCAAGGATCTGATGGTATTCTGAGCACTTCAGAGCATGCAAAGGACAAGTAAGGTACTCTACATACTTTGCTTGGCTAATGCATTTAACGTGATTCTTGCATTACTGATCAAAAAGTGTGCAACCATTTTGTTTTTGAACTATTTTAAACCTGACAGAGTCCTAAAATTGCTGATGTCAATCTGCAAACCTAGATAAATATTAGGGGTGTAATGGTTCAAATTACAATACTCATGGTTTGGTTTTTACAACGGTTTTAGGGTCACGGTTTCAGTATGGTTTGGTATGTGCTATGTTCAAGGAAAAAAAGAACTACTGTCAAATAAAATAAAGAAAATAAGAACAAATAATCAAACTACAAGCAACAGCACAAATAAATAAGTTTTTTTAGCGCTTTGAGTTTGAGAAAAGCTCAATATAAATAAAATGCATCATCATCAAACAATGCTTTTCAGGTTATTTAGGTATCTAACAGTAGTTTTCAGGTACAGAAATTGAATAAAGTAATCAAATGTAAAATAACATTGTAAATAATCTTCACTGTATAAATTAAATAAAGATTAATCATTATTAAAATTACAAAAGCTATTCCGTCAAGAGCAGTGAGTGATTTCCTTGTCTTTTGTTGTTTGATTAACATTAAAAACACAGACAGCAGGAATATTAGGCTGCTGTCCCTTTAAGACATAATGCACAGATTTAACATACTGATACTGTACACATGCGTTGTCTTTCTCGACTGCTTACGTTCACTTAAGACATACCAACCTACTATGTTTCCTAGGATACTTGCCAAGACGGGCATGTTGGCATAATTTTTGTGTGAATTTGTCCGCTCAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU491925 True 3852 lncRNA 0.36 2 15800929 15806758

Neighbor

gene id symbol gene type direction distance location
CI01000304_15794739_15795184 NA coding downstream 4712 15794480 ~ 15796217 (-)
CI01000304_15782838_15784193 ATG101, ATG101.L coding downstream 16736 15782727 ~ 15784193 (-)
CI01000304_15755554_15770449 NA coding downstream 30161 15754452 ~ 15770768 (-)
CI01000304_15715861_15722546 MOGAT2 coding downstream 78383 15715424 ~ 15722546 (-)
CI01000304_15703390_15711806 DGAT2 coding downstream 88810 15703172 ~ 15712119 (-)
CI01000304_15859896_15879052 TRIM37 coding upstream 52359 15859117 ~ 15879376 (-)
CI01000304_15882316_15888812 RABGEF1 coding upstream 74924 15881682 ~ 15888812 (-)
CI01000304_15891065_15894363 KCTD7 coding upstream 84045 15890803 ~ 15894363 (-)
CI01000304_15903075_15957836 CUX1A coding upstream 96317 15903075 ~ 15957836 (-)
CI01000304_15986032_15996763 CUX1 coding upstream 179005 15985763 ~ 15996763 (-)
G428451 NA non-coding downstream 49386 15751343 ~ 15751543 (-)
G428450 NA non-coding downstream 50032 15749584 ~ 15750897 (-)
G428432 NA non-coding downstream 226896 15573732 ~ 15574033 (-)
G428385 NA non-coding downstream 284239 15516463 ~ 15516690 (-)
G428405 NA non-coding upstream 232720 16039478 ~ 16042713 (-)
G428517 NA non-coding upstream 315440 16122198 ~ 16122496 (-)
G428519 NA non-coding upstream 322956 16129714 ~ 16130055 (-)
G428500 NA non-coding upstream 325881 16132639 ~ 16137401 (-)
G428521 NA non-coding upstream 339558 16146316 ~ 16153240 (-)
G427376 NA other downstream 539524 15258964 ~ 15261405 (-)
G427423 NA other downstream 1439037 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 1513325 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 1531358 14265476 ~ 14269571 (-)
G427309 NA other downstream 1592630 14181932 ~ 14237078 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 972606 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 1047807 16854565 ~ 16860911 (-)
G429331 NA other upstream 2117105 17923863 ~ 17924684 (-)
G429499 NA other upstream 2430961 18237719 ~ 18238319 (-)
G429673 NA other upstream 2779684 18586442 ~ 18591856 (-)

Expression


Co-expression Network