G427860


Basic Information

Item Value
gene id G427860
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15885454 ~ 15889591 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU491290
AGACATGCCCTGATAGAAGTCCTGCACACACTCAGACAGTTCTTCAGCACTGAGATCCTTTTTATTTCCCATGCTCTCTATGAAAGCGCGGCTCTGCTTGTGGATCTCTCTGCCAGGTTTCTGCAAGGTCTTGAGGAACTCCAAGAAGTCTCGTGACACGCGATCGGTCTCAATGCTGGACTGACGGGTAATGGAAGGACTGGGCGTTTTTCCCTCATGGCTCTCTTTTTTAGGTGCCGTGCGGGAGGAGGGGCTGAAGAACTTTTTCACGGTGGTGACCTTACGGGTCTTCTCATTGGTTTTCTTCTCTTCGAACTTGGAGAAGGTGGCAAGAGAGGGCTGAGAGTGGGACTGTGGAGGCTGGGTCTGAGAGGAACTGTGACTGCTGACATAAGCTGCCTCCTCTTCTCGTTGCAGCTTCTCAGCCAGAGCCCAGTCCTCCTGGATCTGTCTCTGCCGGGCTTTCTGGTACTCCTCCCTCCAGCACTTGGAGCACAGGCCCTGCCAGGCAGCATTGCCATAGTAACCGCAGCCTTTCTTACACAGCAGTTCCGATTGGTCCACATGGATCCCCCGTCGCTCCGAACGCTGACTCATCGTGTCCCCTTTGTCTCGTCAGCGGTCTCTTCTCCGGGTCACAATGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU491290 True 645 TUCP 0.54 5 15885454 15889591

Neighbor

gene id symbol gene type direction distance location
CI01000304_15817532_15846675 PPM1E coding upstream 38562 15814649 ~ 15846892 (+)
CI01000304_15785399_15786785 RAD51C coding upstream 98426 15785399 ~ 15787028 (+)
CI01000304_15779082_15779951 ZBTB21 coding upstream 105349 15779082 ~ 15780105 (+)
CI01000304_15776859_15777750 ZBTB21 coding upstream 107686 15776859 ~ 15777768 (+)
CI01000304_15723867_15741978 NA coding upstream 142591 15723867 ~ 15742863 (+)
CI01000304_15896045_15897082 NA coding downstream 6454 15896045 ~ 15897843 (+)
CI01000304_15964692_15966904 NA coding downstream 74325 15963916 ~ 15967493 (+)
CI01000304_16040037_16043960 NA coding downstream 150446 16040037 ~ 16043960 (+)
CI01000304_16109760_16122597 NA coding downstream 217787 16107378 ~ 16122874 (+)
CI01000304_16132778_16137222 MDH2.S, MDH2, MDH2.L coding downstream 242284 16131875 ~ 16137348 (+)
G427904 NA non-coding upstream 34318 15840911 ~ 15851136 (+)
G427917 NA non-coding upstream 71031 15813103 ~ 15814423 (+)
G427915 NA non-coding upstream 73421 15809203 ~ 15812033 (+)
G427906 NA non-coding upstream 144350 15740258 ~ 15741104 (+)
G427902 NA non-coding downstream 32588 15922179 ~ 15938102 (+)
G427961 NA non-coding downstream 96984 15986575 ~ 15987610 (+)
G427894 NA non-coding downstream 104905 15994496 ~ 15996274 (+)
G427855 NA non-coding downstream 178157 16067748 ~ 16068983 (+)
G428020 NA non-coding downstream 198478 16088069 ~ 16089172 (+)
G426828 NA other upstream 934862 14948890 ~ 14950592 (+)
G426312 NA other upstream 1554568 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 2306607 13578049 ~ 13595097 (+)
G425718 NA other upstream 3446368 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 5329750 10555216 ~ 10572164 (+)
G428017 NA other downstream 193639 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 615271 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 866355 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 1121139 17009769 ~ 17023882 (+)
CI01000304_17315088_17315342 NA other downstream 1425247 17315087 ~ 17315600 (+)

Expression


Co-expression Network