Gene
RNA
| Item | Value |
|---|---|
| gene id | G428519 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 16129714 ~ 16130055 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU492040 | True | 342 | lncRNA | 0.44 | 1 | 16129714 | 16130055 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_16123390_16127834 | SKA2 | coding | downstream | 1380 | 16123162 ~ 16128334 (-) |
| CI01000304_16077939_16106746 | PRDM15 | coding | downstream | 22731 | 16077492 ~ 16106983 (-) |
| CI01000304_16073177_16076377 | NA | coding | downstream | 53274 | 16073093 ~ 16076440 (-) |
| CI01000304_16067926_16072192 | BCL7BA | coding | downstream | 57522 | 16067887 ~ 16072192 (-) |
| CI01000304_16044458_16066649 | NA | coding | downstream | 63065 | 16044458 ~ 16066649 (-) |
| CI01000304_16202982_16207060 | NA | coding | upstream | 72765 | 16202820 ~ 16207117 (-) |
| CI01000304_16221131_16225319 | NA | coding | upstream | 90679 | 16220734 ~ 16225319 (-) |
| CI01000304_16232120_16237285 | EVA1C | coding | upstream | 101494 | 16231549 ~ 16237285 (-) |
| CI01000304_16247523_16254506 | HUNK | coding | upstream | 116328 | 16246383 ~ 16254506 (-) |
| CI01000304_16305853_16306849 | NA | coding | upstream | 175333 | 16305388 ~ 16306901 (-) |
| G428517 | NA | non-coding | downstream | 7218 | 16122198 ~ 16122496 (-) |
| G428405 | NA | non-coding | downstream | 87001 | 16039478 ~ 16042713 (-) |
| G428411 | NA | non-coding | downstream | 322956 | 15800929 ~ 15806758 (-) |
| CI01000304_15755554_15770449 | NA | non-coding | downstream | 374527 | 15754452 ~ 15770768 (-) |
| G428451 | NA | non-coding | downstream | 378171 | 15751343 ~ 15751543 (-) |
| G428500 | NA | non-coding | upstream | 2584 | 16132639 ~ 16137401 (-) |
| G428521 | NA | non-coding | upstream | 16261 | 16146316 ~ 16153240 (-) |
| G428533 | NA | non-coding | upstream | 67762 | 16197817 ~ 16199521 (-) |
| G428506 | NA | non-coding | upstream | 79034 | 16209089 ~ 16216026 (-) |
| G428509 | NA | non-coding | upstream | 88468 | 16218523 ~ 16219892 (-) |
| G427376 | NA | other | downstream | 868309 | 15258964 ~ 15261405 (-) |
| G427423 | NA | other | downstream | 1767822 | 14361448 ~ 14361892 (-) |
| CI01000304_14286960_14294449 | NA | other | downstream | 1842110 | 14286960 ~ 14294449 (-) |
| CI01000304_14265881_14269102 | NA | other | downstream | 1860143 | 14265476 ~ 14269571 (-) |
| G427309 | NA | other | downstream | 1921415 | 14181932 ~ 14237078 (-) |
| CI01000304_16769537_16780398 | SUPT20, SUPT20H | other | upstream | 649309 | 16769417 ~ 16780398 (-) |
| CI01000304_16854877_16860888 | YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC | other | upstream | 724510 | 16854565 ~ 16860911 (-) |
| G429331 | NA | other | upstream | 1793808 | 17923863 ~ 17924684 (-) |
| G429499 | NA | other | upstream | 2107664 | 18237719 ~ 18238319 (-) |
| G429673 | NA | other | upstream | 2456387 | 18586442 ~ 18591856 (-) |
