Gene
RNA
| Item | Value |
|---|---|
| gene id | G428500 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 16132639 ~ 16137401 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU492018 | True | 1331 | lncRNA | 0.49 | 9 | 16132639 | 16137401 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_16123390_16127834 | SKA2 | coding | downstream | 4305 | 16123162 ~ 16128334 (-) |
| CI01000304_16077939_16106746 | PRDM15 | coding | downstream | 25656 | 16077492 ~ 16106983 (-) |
| CI01000304_16073177_16076377 | NA | coding | downstream | 56199 | 16073093 ~ 16076440 (-) |
| CI01000304_16067926_16072192 | BCL7BA | coding | downstream | 60447 | 16067887 ~ 16072192 (-) |
| CI01000304_16044458_16066649 | NA | coding | downstream | 65990 | 16044458 ~ 16066649 (-) |
| CI01000304_16202982_16207060 | NA | coding | upstream | 65419 | 16202820 ~ 16207117 (-) |
| CI01000304_16221131_16225319 | NA | coding | upstream | 83333 | 16220734 ~ 16225319 (-) |
| CI01000304_16232120_16237285 | EVA1C | coding | upstream | 94148 | 16231549 ~ 16237285 (-) |
| CI01000304_16247523_16254506 | HUNK | coding | upstream | 108982 | 16246383 ~ 16254506 (-) |
| CI01000304_16305853_16306849 | NA | coding | upstream | 167987 | 16305388 ~ 16306901 (-) |
| G428519 | NA | non-coding | downstream | 2584 | 16129714 ~ 16130055 (-) |
| G428517 | NA | non-coding | downstream | 10143 | 16122198 ~ 16122496 (-) |
| G428405 | NA | non-coding | downstream | 89926 | 16039478 ~ 16042713 (-) |
| G428411 | NA | non-coding | downstream | 325881 | 15800929 ~ 15806758 (-) |
| CI01000304_15755554_15770449 | NA | non-coding | downstream | 377452 | 15754452 ~ 15770768 (-) |
| G428521 | NA | non-coding | upstream | 8915 | 16146316 ~ 16153240 (-) |
| G428533 | NA | non-coding | upstream | 60416 | 16197817 ~ 16199521 (-) |
| G428506 | NA | non-coding | upstream | 71688 | 16209089 ~ 16216026 (-) |
| G428509 | NA | non-coding | upstream | 81122 | 16218523 ~ 16219892 (-) |
| G428502 | NA | non-coding | upstream | 82628 | 16220029 ~ 16220413 (-) |
| G427376 | NA | other | downstream | 871234 | 15258964 ~ 15261405 (-) |
| G427423 | NA | other | downstream | 1770747 | 14361448 ~ 14361892 (-) |
| CI01000304_14286960_14294449 | NA | other | downstream | 1845035 | 14286960 ~ 14294449 (-) |
| CI01000304_14265881_14269102 | NA | other | downstream | 1863068 | 14265476 ~ 14269571 (-) |
| G427309 | NA | other | downstream | 1924340 | 14181932 ~ 14237078 (-) |
| CI01000304_16769537_16780398 | SUPT20, SUPT20H | other | upstream | 641963 | 16769417 ~ 16780398 (-) |
| CI01000304_16854877_16860888 | YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC | other | upstream | 717164 | 16854565 ~ 16860911 (-) |
| G429331 | NA | other | upstream | 1786462 | 17923863 ~ 17924684 (-) |
| G429499 | NA | other | upstream | 2100318 | 18237719 ~ 18238319 (-) |
| G429673 | NA | other | upstream | 2449041 | 18586442 ~ 18591856 (-) |
