G428521


Basic Information

Item Value
gene id G428521
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16146316 ~ 16153240 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU492042
TACAACAATGTGCGGTGGCCTCCTCCTTGTGAAGACCATTTATCCAAATCGACTGCCTCATTAAGCTCATTTGTGTTAGCCAGCATTTCCTGAAGGGCCCGCACAGATAGCGACTGCTCCAGGATAAAGCAGCATATAGCCAGATCAGGAGGAACATTCTGGGCATTGGATGTAGTTTCCAGAAAACACAGGCGATTCCCAAAACCCTCACAGGACAGACAGAGTTTGATCTGCTCCTTCAGGATAGTAGCTGTGCACTGTAGAACCACCTGGTCATCTGTTCGTAAGAATTGGATTTCCTCTTCTCCCTCCGCTCCTTCTGCCATGGTGCAGGAGATTTAACCGGCAGGAAAATGAGACGAGGTTCCTTTCTTTCCTTCTTCCCAGCTGGGACAGATCCCAGCCTTAGTTTCCCCACTTCTCTTTGCACTTCGGACCAGGGGCTGCCTATACGGGTGGAAGTATTGAGACTCCAGCTCTGGTGAATGTGGTTCACAGAGACTAACAGGCAGCTCCTTTCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU492042 True 522 lncRNA 0.50 5 16146316 16153240

Neighbor

gene id symbol gene type direction distance location
CI01000304_16123390_16127834 SKA2 coding downstream 17982 16123162 ~ 16128334 (-)
CI01000304_16077939_16106746 PRDM15 coding downstream 39333 16077492 ~ 16106983 (-)
CI01000304_16073177_16076377 NA coding downstream 69876 16073093 ~ 16076440 (-)
CI01000304_16067926_16072192 BCL7BA coding downstream 74124 16067887 ~ 16072192 (-)
CI01000304_16044458_16066649 NA coding downstream 79667 16044458 ~ 16066649 (-)
CI01000304_16202982_16207060 NA coding upstream 49580 16202820 ~ 16207117 (-)
CI01000304_16221131_16225319 NA coding upstream 67494 16220734 ~ 16225319 (-)
CI01000304_16232120_16237285 EVA1C coding upstream 78309 16231549 ~ 16237285 (-)
CI01000304_16247523_16254506 HUNK coding upstream 93143 16246383 ~ 16254506 (-)
CI01000304_16305853_16306849 NA coding upstream 152148 16305388 ~ 16306901 (-)
G428500 NA non-coding downstream 8915 16132639 ~ 16137401 (-)
G428519 NA non-coding downstream 16261 16129714 ~ 16130055 (-)
G428517 NA non-coding downstream 23820 16122198 ~ 16122496 (-)
G428405 NA non-coding downstream 103603 16039478 ~ 16042713 (-)
G428411 NA non-coding downstream 339558 15800929 ~ 15806758 (-)
G428533 NA non-coding upstream 44577 16197817 ~ 16199521 (-)
G428506 NA non-coding upstream 55849 16209089 ~ 16216026 (-)
G428509 NA non-coding upstream 65283 16218523 ~ 16219892 (-)
G428502 NA non-coding upstream 66789 16220029 ~ 16220413 (-)
G428547 NA non-coding upstream 127026 16280266 ~ 16280521 (-)
G427376 NA other downstream 884911 15258964 ~ 15261405 (-)
G427423 NA other downstream 1784424 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 1858712 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 1876745 14265476 ~ 14269571 (-)
G427309 NA other downstream 1938017 14181932 ~ 14237078 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 626124 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 701325 16854565 ~ 16860911 (-)
G429331 NA other upstream 1770623 17923863 ~ 17924684 (-)
G429499 NA other upstream 2084479 18237719 ~ 18238319 (-)
G429673 NA other upstream 2433202 18586442 ~ 18591856 (-)

Expression


Co-expression Network